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814
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Answer:
Answer: Unexpectedly low number of DE genes?
19 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
851
views
Comment:
Comment: I have a problem when I run DESeq2 with one variable with 8 levels, I can't find
19 months ago
swbarnes2
★ 1.4k
1
vote
1
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811
views
Answer:
Answer: Modelling batch effect in DESeq2 - how to interpret the results?
19 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.9k
views
Comment:
Comment: How to sort SAM file
19 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.7k
views
Answer:
Answer: Comparing different method for DESEQ2
20 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.6k
views
Answer:
Answer: No differentially expressed genes after DESeq
20 months ago
swbarnes2
★ 1.4k
1
vote
0
replies
1.7k
views
Comment:
Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
20 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.7k
views
Comment:
Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
20 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
4.4k
views
Comment:
Comment: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
20 months ago
swbarnes2
★ 1.4k
0
votes
1
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4.4k
views
Answer:
Answer: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
20 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
587
views
Answer:
Answer: interaction term formula for DESEQ2?
20 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.1k
views
Answer:
Answer: Clarification about DESeq2 counts() function when dealing with covariates
20 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
491
views
Answer:
Answer: DESeq2 with incorrect adjusted Pvalues
20 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
756
views
Answer:
Answer: Overwhelmed by DESEq2 options and how to answer my questions.: Two conditions an
20 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
441
views
Answer:
Answer: ref treatment
20 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
639
views
Answer:
Answer: code syntax for DESeq2 to derive DEGs from a complicated contrast or interactio
20 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
2.7k
views
Answer:
Answer: Understanding how to contrast two treatments in DESeq2
21 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.6k
views
Comment:
Comment: DESeq2 contrasts using all relevant samples vs all samples
21 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.0k
views
Answer:
Answer: resultsNames(dds) not showing all contrasts
21 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
901
views
Answer:
Answer: DESEq2 rerun gives different results
21 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
991
views
Comment:
Comment: Time course RNA seq with DESeq2
21 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
405
views
Answer:
Answer: DESeq2 comparison of different sample combinations
21 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
420
views
Answer:
Answer: Batch correction in deseq2
21 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.2k
views
Comment:
Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
21 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
950
views
Answer:
Answer: what should be our references when 2 samples which I compare are treated and the
22 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
669
views
Answer:
Answer: DESeq2 Interaction Term Error Occurred
22 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.7k
views
Comment:
Comment: DESeqDataSetFromMatrix error
22 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.7k
views
Answer:
Answer: DESeqDataSetFromMatrix error
22 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
909
views
Comment:
Comment: DiffBind: dba.plotPCA() ellipse
22 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
945
views
Answer:
Answer: Seeking help in multifactor differential gene expression analysis using DESeq2.
22 months ago
swbarnes2
★ 1.4k
2
votes
1
reply
2.7k
views
Comment:
Comment: Using Age or other numerical variable to model expression in deseq2
23 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.1k
views
Comment:
Comment: I got error message about DESeqDataSetFromMatrix
23 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.1k
views
Answer:
Answer: I got error message about DESeqDataSetFromMatrix
23 months ago
swbarnes2
★ 1.4k
1
vote
1
reply
599
views
Answer:
Answer: DESeq2 changing Interaction term interpretation
23 months ago
swbarnes2
★ 1.4k
1
vote
0
replies
1.6k
views
Answer:
Answer: Log2FoldChange and normalized count values are not consistent?
23 months ago
swbarnes2
★ 1.4k
2
votes
0
replies
1.5k
views
Answer:
Answer: Difference between raw counts and featureCounts for DESeq2
2.0 years ago
swbarnes2
★ 1.4k
1
vote
1
reply
828
views
Answer:
Answer: DESeq2 paired design: Differential list comparing fold changes
2.0 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
2.9k
views
Comment:
Comment: HTSeq Counts no longer available
2.0 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
8.6k
views
Comment:
Comment: is it possible to use TPM in DESeq2 ?
2.0 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
8.6k
views
Comment:
Comment: is it possible to use TPM in DESeq2 ?
2.0 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
3.5k
views
Answer:
Answer: DESeq2 how to specify contrast to test difference of differences
2.1 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
2.1k
views
Comment:
Comment: DESeq2::plotPCA plotting error
2.1 years ago
swbarnes2
★ 1.4k
3
votes
2
replies
2.1k
views
Answer:
Answer: DESeq2::plotPCA plotting error
2.1 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
3.8k
views
Comment:
Comment: Best way to do RNA-seq analysis for a small number of samples obtained from 2 di
2.1 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
553
views
Answer:
Answer: batch effects for a single sample?
2.1 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
804
views
Answer:
Answer: Getting erros from dds
2.1 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.5k
views
Answer:
Answer: DESeq2 comparisons with multiple experimental variables?
2.1 years ago
swbarnes2
★ 1.4k
1
vote
1
reply
1.8k
views
Answer:
Answer: Time series and interaction in DESeq2
2.1 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
782
views
Answer:
Answer: Setting up read count data for DESeq2 to create a dds object
2.2 years ago
swbarnes2
★ 1.4k
1
vote
0
replies
782
views
Comment:
Comment: Setting up read count data for DESeq2 to create a dds object
2.2 years ago
swbarnes2
★ 1.4k
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