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Answer: Answer: Once again a "Model matrix not full rank"
20 days ago swbarnes2 ★ 1.4k
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Answer: Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
29 days ago swbarnes2 ★ 1.4k
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237
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Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
5 weeks ago swbarnes2 ★ 1.4k
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218
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Answer: Answer: Design Matrix within group comparison more than two groups
5 weeks ago swbarnes2 ★ 1.4k
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396
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Answer: Answer: DESEQ2 Batch Effect
11 weeks ago swbarnes2 ★ 1.4k
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396
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
11 weeks ago swbarnes2 ★ 1.4k
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434
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Answer: Answer: LOG2FC DESEQ2
3 months ago swbarnes2 ★ 1.4k
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281
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Answer: Answer: Comparing one group against multiple groups in DESeq2
4 months ago swbarnes2 ★ 1.4k
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1.3k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
5 months ago swbarnes2 ★ 1.4k
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610
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Answer: Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
5 months ago swbarnes2 ★ 1.4k
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496
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Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
5 months ago swbarnes2 ★ 1.4k
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868
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Answer: Answer: Two factor design including interaction effect with DESeq2 in R
7 months ago swbarnes2 ★ 1.4k
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447
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Answer: Answer: DeSeq2 data comparison and extracting outputs
7 months ago swbarnes2 ★ 1.4k
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522
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Answer: Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
8 months ago swbarnes2 ★ 1.4k
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608
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Answer: Answer: How to properly compare the group-specific samples using DEseq2
8 months ago swbarnes2 ★ 1.4k
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718
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Answer: Answer: DESeq2 batch design
9 months ago swbarnes2 ★ 1.4k
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937
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Answer: Answer: Handle zero effective gene length when tximport RSEM results
9 months ago swbarnes2 ★ 1.4k
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1.4k
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Answer: Answer: Question about RNAseq analysis in EdgeR to identify common and donor specific di
10 months ago swbarnes2 ★ 1.4k
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618
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Answer: Answer: DESeq2 about comparasion of gene expression change on two-time points between t
12 months ago swbarnes2 ★ 1.4k
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567
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Answer: Answer: Accounting for technical replicates in DESeq2
12 months ago swbarnes2 ★ 1.4k
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523
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Answer: Answer: DESeq2 design formula
13 months ago swbarnes2 ★ 1.4k
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931
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Answer: Answer: Combine RNA-seq
13 months ago swbarnes2 ★ 1.4k
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707
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Answer: Answer: How to import dataset from other software into DESeq2?
13 months ago swbarnes2 ★ 1.4k
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459
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Answer: Answer: DESeq2 statistical model construction
13 months ago swbarnes2 ★ 1.4k
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651
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Answer: Answer: Compare and filter three BAM files
14 months ago swbarnes2 ★ 1.4k
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794
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Answer: Answer: How do I design my DESEQ experiment?
14 months ago swbarnes2 ★ 1.4k
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880
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Answer: Answer: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
14 months ago swbarnes2 ★ 1.4k
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685
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Answer: Answer: RNAseq high padj value from validated samples?
15 months ago swbarnes2 ★ 1.4k
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1.6k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
15 months ago swbarnes2 ★ 1.4k
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2.2k
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Answer: Answer: DESeq2 and heatmap for multiple comparisons
15 months ago swbarnes2 ★ 1.4k
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594
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Answer: Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
15 months ago swbarnes2 ★ 1.4k
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972
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Answer: Answer: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
16 months ago swbarnes2 ★ 1.4k
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938
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Answer: Answer: DESeq2: overlap differentially expressed genes with and without interaction term
17 months ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: running DESeq2 from nanopore wf-alignment workflow
17 months ago swbarnes2 ★ 1.4k
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714
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Answer: Answer: Results analysis of differential gene expression using DESeq2 package
17 months ago swbarnes2 ★ 1.4k
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753
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Answer: Answer: How to filter for counts in different columns
17 months ago swbarnes2 ★ 1.4k
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586
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Answer: Answer: DESeq2 on multiple sample groups
17 months ago swbarnes2 ★ 1.4k
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1.9k
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Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
17 months ago swbarnes2 ★ 1.4k
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2.0k
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Answer: Answer: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.4k
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1.6k
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Answer: Answer: DESeq2 false positive result?
18 months ago • updated 17 months ago swbarnes2 ★ 1.4k
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323
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Answer: Answer: DESeq2 effect of interaction when using a grouping variable
18 months ago swbarnes2 ★ 1.4k
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742
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Answer: Answer: DESeq2 says my sampleinfo has linear combination error but I don't see it...
18 months ago swbarnes2 ★ 1.4k
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746
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Answer: Answer: Error in DESeqDataSetFromHTSeqCount
18 months ago swbarnes2 ★ 1.4k
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569
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Answer: Answer: Analysing only significant genes from differential expression analysis in a repl
18 months ago swbarnes2 ★ 1.4k
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719
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Answer: Answer: DESeq2 correction for biological replicate variance using design
18 months ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: plotCounts to visualize variations of a specific genes along conditions
updated 19 months ago by 42k • written 19 months ago by ★ 1.4k
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916
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Answer: Answer: Design formula with batch effects DESeq2 "Not full rank matrix" error.
19 months ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
19 months ago swbarnes2 ★ 1.4k
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1.0k
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Answer: Answer: disappearing of DEGs genes by adjusting P-value < 0.05
19 months ago swbarnes2 ★ 1.4k
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1
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804
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Answer: Answer: Running DESeq2 on viral infection without control/host data
19 months ago swbarnes2 ★ 1.4k
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