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170
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Answer: Answer: Once again a "Model matrix not full rank"
19 hours ago swbarnes2 ★ 1.3k
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0
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340
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Comment: Comment: DESeq2 output used for PCA plot on R studio
9 days ago swbarnes2 ★ 1.3k
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2
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340
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Comment: Comment: DESeq2 output used for PCA plot on R studio
10 days ago swbarnes2 ★ 1.3k
0
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1
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314
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Answer: Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
10 days ago swbarnes2 ★ 1.3k
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1
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340
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Comment: Comment: DESeq2 output used for PCA plot on R studio
11 days ago swbarnes2 ★ 1.3k
0
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1
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204
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Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
19 days ago swbarnes2 ★ 1.3k
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1
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193
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Answer: Answer: Design Matrix within group comparison more than two groups
22 days ago swbarnes2 ★ 1.3k
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0
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361
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Comment: Comment: DESEQ2 Batch Effect
8 weeks ago swbarnes2 ★ 1.3k
1
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1
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361
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Answer: Answer: DESEQ2 Batch Effect
8 weeks ago swbarnes2 ★ 1.3k
0
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0
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360
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
9 weeks ago swbarnes2 ★ 1.3k
0
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0
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372
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Answer: Answer: LOG2FC DESEQ2
3 months ago swbarnes2 ★ 1.3k
0
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1
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567
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
3 months ago swbarnes2 ★ 1.3k
2
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0
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262
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Answer: Answer: Comparing one group against multiple groups in DESeq2
3 months ago swbarnes2 ★ 1.3k
0
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1
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567
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
3 months ago swbarnes2 ★ 1.3k
0
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0
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1.2k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
4 months ago swbarnes2 ★ 1.3k
0
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1
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567
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Answer: Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
4 months ago swbarnes2 ★ 1.3k
0
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1
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458
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Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
5 months ago swbarnes2 ★ 1.3k
0
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1
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852
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Comment: Comment: DESeq2 Normalization with 4 Groups
6 months ago swbarnes2 ★ 1.3k
1
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0
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806
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Comment: Comment: Two factor design including interaction effect with DESeq2 in R
6 months ago swbarnes2 ★ 1.3k
1
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1
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806
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Answer: Answer: Two factor design including interaction effect with DESeq2 in R
6 months ago swbarnes2 ★ 1.3k
0
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0
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866
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Comment: Comment: DESeq2: Design model includes sex but only one female
6 months ago swbarnes2 ★ 1.3k
0
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0
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420
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Comment: Comment: Issues with ddseq2 for treatment response factoring in different KO clones
6 months ago swbarnes2 ★ 1.3k
0
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0
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422
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Answer: Answer: DeSeq2 data comparison and extracting outputs
7 months ago swbarnes2 ★ 1.3k
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1
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493
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Answer: Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
7 months ago swbarnes2 ★ 1.3k
0
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0
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659
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Comment: Comment: How to use contrast with multiple treatments?
8 months ago swbarnes2 ★ 1.3k
0
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0
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584
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Answer: Answer: How to properly compare the group-specific samples using DEseq2
8 months ago swbarnes2 ★ 1.3k
0
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1
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659
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Comment: Comment: How to use contrast with multiple treatments?
8 months ago swbarnes2 ★ 1.3k
0
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0
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883
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Comment: Comment: Handle zero effective gene length when tximport RSEM results
8 months ago swbarnes2 ★ 1.3k
1
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1
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1.5k
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Comment: Comment: PCA percent variance DESeq2
8 months ago swbarnes2 ★ 1.3k
0
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0
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692
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Answer: Answer: DESeq2 batch design
8 months ago swbarnes2 ★ 1.3k
0
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1
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883
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Answer: Answer: Handle zero effective gene length when tximport RSEM results
8 months ago swbarnes2 ★ 1.3k
1
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1
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1.5k
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Comment: Comment: PCA percent variance DESeq2
8 months ago swbarnes2 ★ 1.3k
0
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0
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1.4k
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Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago swbarnes2 ★ 1.3k
0
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1
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1.4k
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Answer: Answer: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago swbarnes2 ★ 1.3k
0
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0
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795
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Comment: Comment: DESeq2 design formula
10 months ago swbarnes2 ★ 1.3k
1
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0
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640
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Comment: Comment: DESeq2 on multilevel design variable
11 months ago swbarnes2 ★ 1.3k
0
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0
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797
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Comment: Comment: Error: biomaRt has encountered an unexpected server error.
11 months ago swbarnes2 ★ 1.3k
0
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0
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587
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Answer: Answer: DESeq2 about comparasion of gene expression change on two-time points between t
11 months ago swbarnes2 ★ 1.3k
0
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0
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955
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Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
11 months ago swbarnes2 ★ 1.3k
0
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0
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550
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Answer: Answer: Accounting for technical replicates in DESeq2
11 months ago swbarnes2 ★ 1.3k
0
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0
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496
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Answer: Answer: DESeq2 design formula
12 months ago swbarnes2 ★ 1.3k
0
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0
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904
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Answer: Answer: Combine RNA-seq
12 months ago swbarnes2 ★ 1.3k
0
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0
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680
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Answer: Answer: How to import dataset from other software into DESeq2?
13 months ago swbarnes2 ★ 1.3k
0
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0
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450
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Answer: Answer: DESeq2 statistical model construction
13 months ago swbarnes2 ★ 1.3k
0
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1
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634
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Answer: Answer: Compare and filter three BAM files
13 months ago swbarnes2 ★ 1.3k
0
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0
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512
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Comment: Comment: DESeq2 with temporal data and different treatments
13 months ago swbarnes2 ★ 1.3k
0
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1
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770
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Comment: Comment: How do I design my DESEQ experiment?
14 months ago swbarnes2 ★ 1.3k
1
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1
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770
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Answer: Answer: How do I design my DESEQ experiment?
14 months ago swbarnes2 ★ 1.3k
0
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0
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857
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Answer: Answer: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
14 months ago swbarnes2 ★ 1.3k
1
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1
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670
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Answer: Answer: RNAseq high padj value from validated samples?
14 months ago swbarnes2 ★ 1.3k
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