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Comment: Comment: deseq2 results
2 days ago swbarnes2 ★ 1.4k
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294
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Comment: Comment: deseq2 results
3 days ago swbarnes2 ★ 1.4k
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294
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Comment: Comment: deseq2 results
4 days ago swbarnes2 ★ 1.4k
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257
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Answer: Answer: Once again a "Model matrix not full rank"
9 days ago swbarnes2 ★ 1.4k
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366
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Comment: Comment: DESeq2 output used for PCA plot on R studio
18 days ago swbarnes2 ★ 1.4k
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2
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366
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Comment: Comment: DESeq2 output used for PCA plot on R studio
19 days ago swbarnes2 ★ 1.4k
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1
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347
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Answer: Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
19 days ago swbarnes2 ★ 1.4k
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366
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Comment: Comment: DESeq2 output used for PCA plot on R studio
19 days ago swbarnes2 ★ 1.4k
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214
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Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
27 days ago swbarnes2 ★ 1.4k
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207
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Answer: Answer: Design Matrix within group comparison more than two groups
4 weeks ago swbarnes2 ★ 1.4k
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376
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Comment: Comment: DESEQ2 Batch Effect
10 weeks ago swbarnes2 ★ 1.4k
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376
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Answer: Answer: DESEQ2 Batch Effect
10 weeks ago swbarnes2 ★ 1.4k
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372
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
10 weeks ago swbarnes2 ★ 1.4k
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402
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Answer: Answer: LOG2FC DESEQ2
3 months ago swbarnes2 ★ 1.4k
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1
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580
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
3 months ago swbarnes2 ★ 1.4k
2
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268
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Answer: Answer: Comparing one group against multiple groups in DESeq2
3 months ago swbarnes2 ★ 1.4k
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580
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
3 months ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
4 months ago swbarnes2 ★ 1.4k
0
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1
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580
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Answer: Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
4 months ago swbarnes2 ★ 1.4k
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1
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469
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Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
5 months ago swbarnes2 ★ 1.4k
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1
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887
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Comment: Comment: DESeq2 Normalization with 4 Groups
6 months ago swbarnes2 ★ 1.4k
1
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836
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Comment: Comment: Two factor design including interaction effect with DESeq2 in R
6 months ago swbarnes2 ★ 1.4k
1
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836
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Answer: Answer: Two factor design including interaction effect with DESeq2 in R
6 months ago swbarnes2 ★ 1.4k
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889
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Comment: Comment: DESeq2: Design model includes sex but only one female
7 months ago swbarnes2 ★ 1.4k
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428
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Comment: Comment: Issues with ddseq2 for treatment response factoring in different KO clones
7 months ago swbarnes2 ★ 1.4k
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434
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Answer: Answer: DeSeq2 data comparison and extracting outputs
7 months ago swbarnes2 ★ 1.4k
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1
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503
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Answer: Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
7 months ago swbarnes2 ★ 1.4k
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680
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Comment: Comment: How to use contrast with multiple treatments?
8 months ago swbarnes2 ★ 1.4k
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596
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Answer: Answer: How to properly compare the group-specific samples using DEseq2
8 months ago swbarnes2 ★ 1.4k
0
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1
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680
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Comment: Comment: How to use contrast with multiple treatments?
8 months ago swbarnes2 ★ 1.4k
0
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0
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902
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Comment: Comment: Handle zero effective gene length when tximport RSEM results
8 months ago swbarnes2 ★ 1.4k
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1.5k
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Comment: Comment: PCA percent variance DESeq2
8 months ago swbarnes2 ★ 1.4k
0
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0
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705
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Answer: Answer: DESeq2 batch design
8 months ago swbarnes2 ★ 1.4k
0
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1
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902
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Answer: Answer: Handle zero effective gene length when tximport RSEM results
8 months ago swbarnes2 ★ 1.4k
1
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1
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1.5k
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Comment: Comment: PCA percent variance DESeq2
8 months ago swbarnes2 ★ 1.4k
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0
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1.4k
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Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: Answer: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago swbarnes2 ★ 1.4k
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0
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810
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Comment: Comment: DESeq2 design formula
10 months ago swbarnes2 ★ 1.4k
1
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656
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Comment: Comment: DESeq2 on multilevel design variable
11 months ago swbarnes2 ★ 1.4k
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0
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813
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Comment: Comment: Error: biomaRt has encountered an unexpected server error.
11 months ago swbarnes2 ★ 1.4k
0
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0
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602
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Answer: Answer: DESeq2 about comparasion of gene expression change on two-time points between t
11 months ago swbarnes2 ★ 1.4k
0
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0
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965
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Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
12 months ago swbarnes2 ★ 1.4k
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0
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558
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Answer: Answer: Accounting for technical replicates in DESeq2
12 months ago swbarnes2 ★ 1.4k
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508
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Answer: Answer: DESeq2 design formula
12 months ago swbarnes2 ★ 1.4k
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915
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Answer: Answer: Combine RNA-seq
12 months ago swbarnes2 ★ 1.4k
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690
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Answer: Answer: How to import dataset from other software into DESeq2?
13 months ago swbarnes2 ★ 1.4k
0
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0
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453
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Answer: Answer: DESeq2 statistical model construction
13 months ago swbarnes2 ★ 1.4k
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1
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639
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Answer: Answer: Compare and filter three BAM files
13 months ago swbarnes2 ★ 1.4k
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0
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525
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Comment: Comment: DESeq2 with temporal data and different treatments
14 months ago swbarnes2 ★ 1.4k
0
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1
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779
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Comment: Comment: How do I design my DESEQ experiment?
14 months ago swbarnes2 ★ 1.4k
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