Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
0
replies
292
views
Answer: Answer: Once again a "Model matrix not full rank"
14 days ago swbarnes2 ★ 1.4k
0
votes
1
reply
357
views
Answer: Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
24 days ago swbarnes2 ★ 1.4k
0
votes
1
reply
230
views
Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
4 weeks ago swbarnes2 ★ 1.4k
1
vote
1
reply
211
views
Answer: Answer: Design Matrix within group comparison more than two groups
5 weeks ago swbarnes2 ★ 1.4k
1
vote
1
reply
386
views
Answer: Answer: DESEQ2 Batch Effect
10 weeks ago swbarnes2 ★ 1.4k
0
votes
0
replies
382
views
Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
11 weeks ago swbarnes2 ★ 1.4k
0
votes
0
replies
419
views
Answer: Answer: LOG2FC DESEQ2
3 months ago swbarnes2 ★ 1.4k
2
votes
0
replies
277
views
Answer: Answer: Comparing one group against multiple groups in DESeq2
3 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.3k
views
Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
4 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
592
views
Answer: Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
4 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
480
views
Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
5 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
853
views
Answer: Answer: Two factor design including interaction effect with DESeq2 in R
6 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
437
views
Answer: Answer: DeSeq2 data comparison and extracting outputs
7 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
509
views
Answer: Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
7 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
600
views
Answer: Answer: How to properly compare the group-specific samples using DEseq2
8 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
710
views
Answer: Answer: DESeq2 batch design
9 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
919
views
Answer: Answer: Handle zero effective gene length when tximport RSEM results
9 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.4k
views
Answer: Answer: Question about RNAseq analysis in EdgeR to identify common and donor specific di
10 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
610
views
Answer: Answer: DESeq2 about comparasion of gene expression change on two-time points between t
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
560
views
Answer: Answer: Accounting for technical replicates in DESeq2
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
514
views
Answer: Answer: DESeq2 design formula
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
922
views
Answer: Answer: Combine RNA-seq
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
697
views
Answer: Answer: How to import dataset from other software into DESeq2?
13 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
456
views
Answer: Answer: DESeq2 statistical model construction
13 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
645
views
Answer: Answer: Compare and filter three BAM files
14 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
790
views
Answer: Answer: How do I design my DESEQ experiment?
14 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
869
views
Answer: Answer: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
14 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
683
views
Answer: Answer: RNAseq high padj value from validated samples?
14 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.6k
views
Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
15 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.2k
views
Answer: Answer: DESeq2 and heatmap for multiple comparisons
15 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
585
views
Answer: Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
15 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
958
views
Answer: Answer: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
16 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
935
views
Answer: Answer: DESeq2: overlap differentially expressed genes with and without interaction term
17 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.2k
views
Answer: Answer: running DESeq2 from nanopore wf-alignment workflow
17 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
709
views
Answer: Answer: Results analysis of differential gene expression using DESeq2 package
17 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
750
views
Answer: Answer: How to filter for counts in different columns
17 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
576
views
Answer: Answer: DESeq2 on multiple sample groups
17 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.9k
views
Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
17 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
2.0k
views
Answer: Answer: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.4k
2
votes
1
reply
1.6k
views
Answer: Answer: DESeq2 false positive result?
17 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
320
views
Answer: Answer: DESeq2 effect of interaction when using a grouping variable
18 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
737
views
Answer: Answer: DESeq2 says my sampleinfo has linear combination error but I don't see it...
18 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
738
views
Answer: Answer: Error in DESeqDataSetFromHTSeqCount
18 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
567
views
Answer: Answer: Analysing only significant genes from differential expression analysis in a repl
18 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
712
views
Answer: Answer: DESeq2 correction for biological replicate variance using design
18 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.6k
views
Answer: Answer: plotCounts to visualize variations of a specific genes along conditions
updated 18 months ago by 42k • written 18 months ago by ★ 1.4k
0
votes
0
replies
910
views
Answer: Answer: Design formula with batch effects DESeq2 "Not full rank matrix" error.
19 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.7k
views
Answer: Answer: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
19 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.0k
views
Answer: Answer: disappearing of DEGs genes by adjusting P-value < 0.05
19 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
799
views
Answer: Answer: Running DESeq2 on viral infection without control/host data
19 months ago swbarnes2 ★ 1.4k
232 results • Page 1 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6