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Answer: Answer: DESeq2 and heatmap for multiple comparisons
14 months ago swbarnes2 ★ 1.3k
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Answer: Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
15 months ago swbarnes2 ★ 1.3k
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912
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Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
15 months ago swbarnes2 ★ 1.3k
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912
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Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
15 months ago swbarnes2 ★ 1.3k
0
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1
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912
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Answer: Answer: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
15 months ago swbarnes2 ★ 1.3k
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849
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Comment: Comment: Gene TPM validity with STAR only quantification
16 months ago swbarnes2 ★ 1.3k
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907
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Answer: Answer: DESeq2: overlap differentially expressed genes with and without interaction term
16 months ago swbarnes2 ★ 1.3k
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1.1k
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Answer: Answer: running DESeq2 from nanopore wf-alignment workflow
16 months ago swbarnes2 ★ 1.3k
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689
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Answer: Answer: Results analysis of differential gene expression using DESeq2 package
16 months ago swbarnes2 ★ 1.3k
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717
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Comment: Comment: what could be the source of this erro
16 months ago swbarnes2 ★ 1.3k
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717
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Comment: Comment: what could be the source of this erro
16 months ago swbarnes2 ★ 1.3k
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724
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Answer: Answer: How to filter for counts in different columns
16 months ago swbarnes2 ★ 1.3k
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507
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Comment: Comment: checkFullRank(modelMatrix) while neither factor can be predicted from each other
16 months ago swbarnes2 ★ 1.3k
2
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969
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Comment: Comment: Rlog performed on tpm or raw transcript abundances?
16 months ago swbarnes2 ★ 1.3k
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1.9k
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Comment: Comment: FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-pr
17 months ago swbarnes2 ★ 1.3k
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1.9k
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Comment: Comment: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
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1.9k
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Comment: Comment: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
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1
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1.9k
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Comment: Comment: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
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547
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Answer: Answer: DESeq2 on multiple sample groups
17 months ago swbarnes2 ★ 1.3k
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1.9k
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Comment: Comment: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
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1.9k
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Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
17 months ago swbarnes2 ★ 1.3k
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1.9k
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Comment: Comment: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
17 months ago swbarnes2 ★ 1.3k
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1.9k
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Answer: Answer: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
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1.6k
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Answer: Answer: DESeq2 false positive result?
17 months ago swbarnes2 ★ 1.3k
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838
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Comment: Comment: Remove low-expressed genes in DESeq2?
17 months ago swbarnes2 ★ 1.3k
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311
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Answer: Answer: DESeq2 effect of interaction when using a grouping variable
17 months ago swbarnes2 ★ 1.3k
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699
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Comment: Comment: DESeq2 says my sampleinfo has linear combination error but I don't see it...
17 months ago swbarnes2 ★ 1.3k
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699
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Answer: Answer: DESeq2 says my sampleinfo has linear combination error but I don't see it...
17 months ago swbarnes2 ★ 1.3k
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703
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Answer: Answer: Error in DESeqDataSetFromHTSeqCount
17 months ago swbarnes2 ★ 1.3k
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0
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558
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Answer: Answer: Analysing only significant genes from differential expression analysis in a repl
17 months ago swbarnes2 ★ 1.3k
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697
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Answer: Answer: DESeq2 correction for biological replicate variance using design
17 months ago swbarnes2 ★ 1.3k
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2
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1.3k
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Comment: Comment: why there are read counts in the gene knock out rat RNA-seq data
17 months ago swbarnes2 ★ 1.3k
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1.6k
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Answer: Answer: plotCounts to visualize variations of a specific genes along conditions
updated 18 months ago by 41k • written 18 months ago by ★ 1.3k
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796
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Comment: Comment: RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
18 months ago swbarnes2 ★ 1.3k
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Comment: Comment: t.test to determine the P-value in DESeq2
18 months ago swbarnes2 ★ 1.3k
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0
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881
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Answer: Answer: Design formula with batch effects DESeq2 "Not full rank matrix" error.
18 months ago swbarnes2 ★ 1.3k
0
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1
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978
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Comment: Comment: disappearing of DEGs genes by adjusting P-value < 0.05
18 months ago swbarnes2 ★ 1.3k
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2.1k
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Comment: Comment: t.test to determine the P-value in DESeq2
18 months ago swbarnes2 ★ 1.3k
0
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1
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2.1k
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Comment: Comment: t.test to determine the P-value in DESeq2
18 months ago swbarnes2 ★ 1.3k
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1
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1.6k
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Answer: Answer: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
18 months ago swbarnes2 ★ 1.3k
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1.8k
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Comment: Comment: How to sort SAM file
18 months ago swbarnes2 ★ 1.3k
0
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1
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978
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Answer: Answer: disappearing of DEGs genes by adjusting P-value < 0.05
18 months ago swbarnes2 ★ 1.3k
0
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763
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Comment: Comment: Running DESeq2 on viral infection without control/host data
18 months ago swbarnes2 ★ 1.3k
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763
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Answer: Answer: Running DESeq2 on viral infection without control/host data
18 months ago swbarnes2 ★ 1.3k
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582
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Answer: Answer: RNA-seq DESeq2 factor design
18 months ago swbarnes2 ★ 1.3k
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1
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793
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Answer: Answer: Unexpectedly low number of DE genes?
18 months ago swbarnes2 ★ 1.3k
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831
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Comment: Comment: I have a problem when I run DESeq2 with one variable with 8 levels, I can't find
18 months ago swbarnes2 ★ 1.3k
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787
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Answer: Answer: Modelling batch effect in DESeq2 - how to interpret the results?
19 months ago swbarnes2 ★ 1.3k
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1.8k
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Comment: Comment: How to sort SAM file
19 months ago swbarnes2 ★ 1.3k
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1
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1.6k
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Answer: Answer: Comparing different method for DESEQ2
19 months ago swbarnes2 ★ 1.3k
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