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Answer: Answer: RNA-seq DESeq2 factor design
18 months ago swbarnes2 ★ 1.3k
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806
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Answer: Answer: Unexpectedly low number of DE genes?
18 months ago swbarnes2 ★ 1.3k
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796
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Answer: Answer: Modelling batch effect in DESeq2 - how to interpret the results?
19 months ago swbarnes2 ★ 1.3k
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1.7k
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Answer: Answer: Comparing different method for DESEQ2
19 months ago swbarnes2 ★ 1.3k
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1.6k
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Answer: Answer: No differentially expressed genes after DESeq
19 months ago swbarnes2 ★ 1.3k
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4.3k
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Answer: Answer: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
19 months ago swbarnes2 ★ 1.3k
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580
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Answer: Answer: interaction term formula for DESEQ2?
19 months ago swbarnes2 ★ 1.3k
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1.1k
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Answer: Answer: Clarification about DESeq2 counts() function when dealing with covariates
20 months ago swbarnes2 ★ 1.3k
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483
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Answer: Answer: DESeq2 with incorrect adjusted Pvalues
20 months ago swbarnes2 ★ 1.3k
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749
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Answer: Answer: Overwhelmed by DESEq2 options and how to answer my questions.: Two conditions an
20 months ago swbarnes2 ★ 1.3k
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431
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Answer: Answer: ref treatment
20 months ago swbarnes2 ★ 1.3k
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630
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Answer: Answer: code syntax for DESeq2 to derive DEGs from a complicated contrast or interactio
20 months ago swbarnes2 ★ 1.3k
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2.6k
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Answer: Answer: Understanding how to contrast two treatments in DESeq2
20 months ago swbarnes2 ★ 1.3k
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1.0k
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Answer: Answer: resultsNames(dds) not showing all contrasts
20 months ago swbarnes2 ★ 1.3k
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872
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Answer: Answer: DESEq2 rerun gives different results
20 months ago swbarnes2 ★ 1.3k
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385
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Answer: Answer: DESeq2 comparison of different sample combinations
20 months ago swbarnes2 ★ 1.3k
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411
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Answer: Answer: Batch correction in deseq2
20 months ago swbarnes2 ★ 1.3k
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916
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Answer: Answer: what should be our references when 2 samples which I compare are treated and the
21 months ago swbarnes2 ★ 1.3k
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660
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Answer: Answer: DESeq2 Interaction Term Error Occurred
21 months ago swbarnes2 ★ 1.3k
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1.6k
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Answer: Answer: DESeqDataSetFromMatrix error
22 months ago swbarnes2 ★ 1.3k
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932
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Answer: Answer: Seeking help in multifactor differential gene expression analysis using DESeq2.
22 months ago swbarnes2 ★ 1.3k
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1.1k
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Answer: Answer: I got error message about DESeqDataSetFromMatrix
22 months ago swbarnes2 ★ 1.3k
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595
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Answer: Answer: DESeq2 changing Interaction term interpretation
23 months ago swbarnes2 ★ 1.3k
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1.5k
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Answer: Answer: Log2FoldChange and normalized count values are not consistent?
23 months ago swbarnes2 ★ 1.3k
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1.5k
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Answer: Answer: Difference between raw counts and featureCounts for DESeq2
24 months ago swbarnes2 ★ 1.3k
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812
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Answer: Answer: DESeq2 paired design: Differential list comparing fold changes
24 months ago swbarnes2 ★ 1.3k
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3.4k
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Answer: Answer: DESeq2 how to specify contrast to test difference of differences
2.0 years ago swbarnes2 ★ 1.3k
3
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2
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2.1k
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Answer: Answer: DESeq2::plotPCA plotting error
2.0 years ago swbarnes2 ★ 1.3k
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0
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541
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Answer: Answer: batch effects for a single sample?
2.1 years ago swbarnes2 ★ 1.3k
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0
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791
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Answer: Answer: Getting erros from dds
2.1 years ago swbarnes2 ★ 1.3k
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1.4k
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Answer: Answer: DESeq2 comparisons with multiple experimental variables?
2.1 years ago swbarnes2 ★ 1.3k
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1.8k
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Answer: Answer: Time series and interaction in DESeq2
2.1 years ago swbarnes2 ★ 1.3k
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761
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Answer: Answer: Setting up read count data for DESeq2 to create a dds object
2.1 years ago swbarnes2 ★ 1.3k
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1.6k
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Answer: Answer: Understandig listValues argument of DESEQ in multiple group comparisons
2.2 years ago swbarnes2 ★ 1.3k
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2
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1.2k
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Answer: Answer: Multi-factor paired RNAseq differential analysis with DEseq2
2.3 years ago swbarnes2 ★ 1.3k
2
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2.2k
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Answer: Answer: Start to End RNA-Seq with R Bioconductor
2.3 years ago swbarnes2 ★ 1.3k
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3.9k
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Answer: Answer: Deseq2 normalization for WGCNA
2.4 years ago swbarnes2 ★ 1.3k
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1.9k
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Answer: Answer: DESeq2 - batch, condition and tissue information
2.4 years ago swbarnes2 ★ 1.3k
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1.5k
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Answer: Answer: NA values for mitochondrial gene percentage
2.4 years ago swbarnes2 ★ 1.3k
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1.2k
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Answer: Answer: Design formula in DESeq2
2.4 years ago swbarnes2 ★ 1.3k
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1.3k
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Answer: Answer: tximport question on what counts to use for LogFC calculations
2.4 years ago swbarnes2 ★ 1.3k
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0
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671
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Answer: Answer: DESeq2: Difference between two groups of conditions
2.5 years ago swbarnes2 ★ 1.3k
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1.5k
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Answer: Answer: Which rlog should I use for DESeq2 analysis
2.5 years ago swbarnes2 ★ 1.3k
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734
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Answer: Answer: Complex Contrast in DESeq2
2.5 years ago swbarnes2 ★ 1.3k
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1.0k
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Answer: Answer: DESeq2 interaction terms in 2x2x2 factorial design
2.5 years ago swbarnes2 ★ 1.3k
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0
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862
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Answer: Answer: DESeq2 ratio of ratios and p-value
2.5 years ago swbarnes2 ★ 1.3k
2
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1.4k
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Answer: Answer: Batch effect from to sequencing data at differents depths
2.5 years ago swbarnes2 ★ 1.3k
0
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786
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Answer: Answer: results() function and finding the difference of differences
2.5 years ago swbarnes2 ★ 1.3k
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1.1k
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Answer: Answer: DESeq2 PlotCounts() function
2.5 years ago swbarnes2 ★ 1.3k
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1.1k
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Answer: Answer: DESeq2 Design Matrix Two Conditions and Two Treatments
2.6 years ago swbarnes2 ★ 1.3k
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