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1
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2.0k
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pileup coverage from BAM file
Coverage
Cancer
IRanges
GenomicRanges
Coverage
Cancer
IRanges
GenomicRanges
11.6 years ago
Martin Morgan
25k
0
votes
1
reply
1.8k
views
Comment:
C: Visualization of alignments with mismatch bases
11.6 years ago
Martin Morgan
25k
0
votes
0
replies
1.7k
views
Comment:
C: illegal operand when I run DEXSeq
11.6 years ago
Martin Morgan
25k
0
votes
0
replies
1.1k
views
Answer:
A: writeFastq writing dashes instead of dots
11.6 years ago
Martin Morgan
25k
0
votes
1
reply
1.1k
views
Answer:
A: writeFastq writing dashes instead of dots
11.6 years ago
Martin Morgan
25k
0
votes
0
replies
7.6k
views
Comment:
C: subset GRanges object via ElementMetadata
11.6 years ago
Martin Morgan
25k
0
votes
1
reply
1.7k
views
Comment:
C: What happened to GenomicFeatures::spliceGraph?
11.6 years ago
Martin Morgan
25k
0
votes
0
replies
2.8k
views
Comment:
C: Trouble creating a ShortReadQ object and using writeFastq
11.6 years ago
Martin Morgan
25k
0
votes
1
reply
2.8k
views
Answer:
A: Trouble creating a ShortReadQ object and using writeFastq
11.6 years ago
Martin Morgan
25k
0
votes
0
replies
872
views
New course material: Intermediate R / Bioc for High-Throughput Sequence Analysis
Annotation
Visualization
Cancer
Annotation
Visualization
Cancer
11.6 years ago
Martin Morgan
25k
0
votes
1
reply
1.3k
views
Answer:
A: where is exonsOnTP53Genome defined
11.6 years ago
Martin Morgan
25k
0
votes
0
replies
729
views
Comment:
C: adding papaya genome to BSgenome
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
6.4k
views
Answer:
A: readFasta and gzipped FASTA files
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
996
views
Answer:
A: counting BAM reads in a set of genomic regions
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.3k
views
Answer:
A: HiTC: problem with HTClist
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
2.2k
views
Comment:
C: rhdf5 and factors
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
1.7k
views
Answer:
A: GSEABase error parsing msigdb_v3.1.xml
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
2.6k
views
Comment:
C: Confusion over inconsistencies with showMethods('Rle') when loaded via GenomicRa
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.8k
views
Comment:
C: how to understand the concept metadata in bioconductor
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
669
views
Course reminder: Intermediate R / Bioc for Sequence Analysis
Cancer
Cancer
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.9k
views
Answer:
A: affy code archeology: expresso behavior for liwong/invariantset
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
4.1k
views
Answer:
A: getAnnMap: package hgu95av2 not available
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
2.2k
views
Comment:
C: rhdf5 and factors
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
1.0k
views
Comment:
C: split(SE, seqnames(SE)) doesn't work anymore
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
693
views
Answer:
A: shortread error?
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
948
views
Comment:
C: Using summarizeOverlaps with multiple samples/readgroups in a single bam file?
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
3.1k
views
Answer:
A: R 2.15.2 trouble
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.6k
views
Answer:
A: [devteam-bioc] Can you give me a sample to calculate the Read Depth with Rsamtoo
11.7 years ago
Martin Morgan
25k
0
votes
2
replies
1.6k
views
[devteam-bioc] Can you give me a sample to calculate the Read Depth with Rsamtools?
Coverage
Cancer
Rsamtools
Coverage
Cancer
Rsamtools
updated 11.7 years ago by
Renjie Tan
▴ 10 • written 11.7 years ago by
Martin Morgan
25k
0
votes
2
replies
2.5k
views
Comment:
C: Transformation of Grange object to density per bin
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.2k
views
Answer:
A: cummeRbund masks featureNames and samples from Biobase
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.2k
views
Answer:
A: cummeRbund masks featureNames and samples from Biobase
11.7 years ago
Martin Morgan
25k
0
votes
2
replies
2.2k
views
Comment:
C: error installing KEGGSOAP
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
2.2k
views
Comment:
C: error installing KEGGSOAP
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
2.2k
views
Answer:
A: error installing KEGGSOAP
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
3.7k
views
Comment:
C: Turning a GRanges Metadata Column into Rle List
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
948
views
Answer:
A: Using summarizeOverlaps with multiple samples/readgroups in a single bam file?
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.1k
views
Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 14-15 Feb, Seattle
Cancer
Cancer
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
2.5k
views
Comment:
C: new package for generating interactive HTML reports
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
2.4k
views
Comment:
C: Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"
11.7 years ago
Martin Morgan
25k
0
votes
1
reply
2.6k
views
Comment:
C: minfi - how to subset a GenomicMethylSet by chromosome/seqname
11.8 years ago
Martin Morgan
25k
0
votes
0
replies
7.1k
views
Answer:
A: BAM files to Genomic Ranges object
11.8 years ago
Martin Morgan
25k
0
votes
2
replies
1.4k
views
normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer
Homo sapiens
affy
Cancer
Homo sapiens
affy
updated 11.8 years ago by
w langdon
▴ 20 • written 11.8 years ago by
Martin Morgan
25k
0
votes
1
reply
1.1k
views
Comment:
C: transcriptsBy via TxDb.Hsapiens.UCSC.hg19.knownGene painfully slow
11.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.1k
views
Answer:
A: transcriptsBy via TxDb.Hsapiens.UCSC.hg19.knownGene painfully slow
11.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.1k
views
Answer:
A: Bioconductor Cloud AMI
11.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.1k
views
Answer:
A: Counting number of intervals with or without GRange
11.8 years ago
Martin Morgan
25k
0
votes
0
replies
2.8k
views
Comment:
C: problem with manipulating graphs created from dot files read by agread()
11.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.4k
views
Comment:
C: rTANDEM package -- An R encapsulation of the X!Tandem algorithm
11.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.6k
views
Comment:
C: pileupAsGRanges depth limit
11.8 years ago
Martin Morgan
25k
3,537 results • Page
49 of 71
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