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Answer: Answer: extracting the KEGG pathway for a set of genes
3.5 years ago Kevin Blighe ★ 4.0k
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4.7k
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Comment: Comment: cant read celfiles using oligo package
3.5 years ago Kevin Blighe ★ 4.0k
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1.3k
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Comment: Comment: DESeq2: difficulty with contrasts and main effects
3.5 years ago Kevin Blighe ★ 4.0k
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3.5k
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Comment: Comment: Combat and dds Object
3.6 years ago Kevin Blighe ★ 4.0k
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3.5k
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Answer: Answer: Combat and dds Object
3.6 years ago Kevin Blighe ★ 4.0k
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1.4k
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Answer: Answer: Help With TCGAbiolinks package
3.6 years ago Kevin Blighe ★ 4.0k
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0
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7.6k
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Comment: Comment: Problems with installation of 'phyloseq
3.6 years ago Kevin Blighe ★ 4.0k
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1
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7.3k
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Comment: Comment: Compilation fatal error: iostream.h: No such file or directory when installing R
3.6 years ago Kevin Blighe ★ 4.0k
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1
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7.6k
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Answer: Answer: Problems with installation of 'phyloseq
3.6 years ago Kevin Blighe ★ 4.0k
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2.6k
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Comment: Comment: WGCNA adjust p value
3.6 years ago Kevin Blighe ★ 4.0k
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1.0k
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Answer: Answer: python and R
3.6 years ago Kevin Blighe ★ 4.0k
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2.3k
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Comment: Comment: Getting paralogus genes from biomart for mouse
3.6 years ago Kevin Blighe ★ 4.0k
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5.0k
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Comment: Comment: Using R BioMart getting orthologus genes between two species
3.6 years ago Kevin Blighe ★ 4.0k
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5.0k
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Comment: Comment: Using R BioMart getting orthologus genes between two species
3.6 years ago Kevin Blighe ★ 4.0k
0
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1
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5.0k
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Comment: Comment: Using R BioMart getting orthologus genes between two species
3.6 years ago Kevin Blighe ★ 4.0k
1
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1
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5.0k
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Answer: Answer: Using R BioMart getting orthologus genes between two species
3.6 years ago Kevin Blighe ★ 4.0k
1
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1
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4.3k
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Comment: Comment: WGCNA coupled with differential expression analysis: question about baseline mod
3.6 years ago Kevin Blighe ★ 4.0k
1
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1
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5.2k
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Comment: Comment: How can I use geom_label_repel with EnhancedVolcano?
3.6 years ago Kevin Blighe ★ 4.0k
0
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1
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5.2k
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Comment: Comment: How can I use geom_label_repel with EnhancedVolcano?
3.6 years ago Kevin Blighe ★ 4.0k
0
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2.8k
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Comment: Comment: how to construct a DBA object from count matrix
3.6 years ago Kevin Blighe ★ 4.0k
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1
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2.8k
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Comment: Comment: how to construct a DBA object from count matrix
3.6 years ago Kevin Blighe ★ 4.0k
1
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1
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3.4k
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Answer: Answer: mapping mouse ENSEMBL ids to human gene symbol
3.6 years ago Kevin Blighe ★ 4.0k
2
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1
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3.5k
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Answer: Answer: A permanent error in DESeq2
3.6 years ago Kevin Blighe ★ 4.0k
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693
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Answer: Answer: Identifying sample considered in each group
3.6 years ago Kevin Blighe ★ 4.0k
0
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0
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792
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Answer: Answer: Group-specific condition effect
3.6 years ago Kevin Blighe ★ 4.0k
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1
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3.1k
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Answer: Answer: DESeq2 question: why I got discrepancy results for DEGs when using different way
3.6 years ago Kevin Blighe ★ 4.0k
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0
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3.1k
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Comment: Comment: undefined columns selected
3.6 years ago Kevin Blighe ★ 4.0k
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3.1k
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Comment: Comment: undefined columns selected
3.6 years ago Kevin Blighe ★ 4.0k
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2
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3.1k
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Answer: Answer: DESeq2 - groups with biological replicates from the same patient
3.6 years ago Kevin Blighe ★ 4.0k
1
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0
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4.1k
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Comment: Comment: Clarification re VST transformed data in DESeq2
3.6 years ago Kevin Blighe ★ 4.0k
0
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1
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2.5k
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Answer: Answer: How to fix .bam file that was diagnosed as "MISSING_READ_GROUP" by Picard Valida
3.6 years ago Kevin Blighe ★ 4.0k
0
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2.3k
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Comment: Comment: bcftools command not found
3.6 years ago Kevin Blighe ★ 4.0k
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0
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1.1k
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Comment: Comment: Adding insect abundance data to SparCC Analysis
3.6 years ago Kevin Blighe ★ 4.0k
0
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0
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883
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Answer: Answer: Purpose of seqtabNoC
3.7 years ago Kevin Blighe ★ 4.0k
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0
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1.0k
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Comment: Comment: Installing Packages repeatedly
3.7 years ago Kevin Blighe ★ 4.0k
0
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1
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1.0k
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Answer: Answer: Installing Packages repeatedly
3.7 years ago Kevin Blighe ★ 4.0k
2
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0
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7.7k
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Answer: Answer: EnhancedVolcano Label Question
3.7 years ago Kevin Blighe ★ 4.0k
1
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1
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4.9k
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Answer: Answer: Error in SingleR, no common genes between 'test' and 'ref'
3.7 years ago Kevin Blighe ★ 4.0k
2
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1
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20k
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Comment: Comment: deseq2 normalized data with heatmap
3.7 years ago Kevin Blighe ★ 4.0k
0
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0
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964
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Comment: Comment: DESeq2 codes
3.7 years ago Kevin Blighe ★ 4.0k
0
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0
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2.5k
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Comment: Comment: DESeq2: Variable Importance
3.7 years ago Kevin Blighe ★ 4.0k
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0
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2.3k
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Answer: Answer: Network analysis: Is low confidence score valid (STRING DB)
3.7 years ago Kevin Blighe ★ 4.0k
0
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1
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1.5k
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Answer: Answer: TCGA data Query (GDCquery): external_gene_name " are missing
3.7 years ago Kevin Blighe ★ 4.0k
0
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0
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2.5k
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Answer: Answer: Doing differential expression using FPKM , samples don't have replication
3.7 years ago Kevin Blighe ★ 4.0k
2
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0
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15k
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Comment: Comment: Can't able to install Seurat in Rstudio
3.7 years ago Kevin Blighe ★ 4.0k
0
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1
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1.8k
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Answer: Answer: Design Formula, PCA, and Sex Effect
3.7 years ago Kevin Blighe ★ 4.0k
1
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1
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15k
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Comment: Comment: Can't able to install Seurat in Rstudio
3.7 years ago Kevin Blighe ★ 4.0k
1
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1
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15k
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Comment: Comment: Can't able to install Seurat in Rstudio
3.7 years ago Kevin Blighe ★ 4.0k
0
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1
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15k
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Comment: Comment: Can't able to install Seurat in Rstudio
3.7 years ago Kevin Blighe ★ 4.0k
0
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1
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15k
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Comment: Comment: Can't able to install Seurat in Rstudio
3.7 years ago Kevin Blighe ★ 4.0k
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