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4.4k
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Comment: Comment: Jitter p-values in volcano plot
4.1 years ago Kevin Blighe ★ 4.0k
0
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1
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4.4k
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Comment: Comment: Jitter p-values in volcano plot
4.1 years ago Kevin Blighe ★ 4.0k
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0
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1.5k
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Comment: Comment: Pathway analysis using GAGE returns all NA values
4.1 years ago Kevin Blighe ★ 4.0k
2
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0
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792
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Answer: Answer: How to extract top DEG and their sample values
4.1 years ago Kevin Blighe ★ 4.0k
1
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0
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600
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Answer: Comment: correlation analysis
4.1 years ago Kevin Blighe ★ 4.0k
0
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0
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1.2k
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Comment: Comment: Gviz vertical text labels
4.1 years ago Kevin Blighe ★ 4.0k
2
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1
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3.4k
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Answer: Answer: enhancedVolcano: Why are only a few of my select labels showing up?
4.1 years ago Kevin Blighe ★ 4.0k
1
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0
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2.6k
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Comment: Comment: Volcano plot - select additional gene
4.1 years ago Kevin Blighe ★ 4.0k
1
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0
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920
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Comment: Comment: log transform or not the dependent variable/ covariates
4.1 years ago Kevin Blighe ★ 4.0k
2
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1
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2.6k
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Comment: Comment: Volcano plot - select additional gene
4.1 years ago Kevin Blighe ★ 4.0k
0
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0
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1.7k
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Comment: C: PCATools: is it possible to output a single legend when using pairsplot()?
4.1 years ago Kevin Blighe ★ 4.0k
1
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1
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1.7k
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Answer: A: PCATools: is it possible to output a single legend when using pairsplot()?
4.1 years ago Kevin Blighe ★ 4.0k
0
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1
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706
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Comment: C: Help! How to convert S-Fe10_GL0038907 to a protein name
4.2 years ago Kevin Blighe ★ 4.0k
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0
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847
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Comment: C: How to get similarity score between two genomes of different species
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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1.5k
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Comment: C: Pathway analysis of bacterial RNA-seq data
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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1.3k
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Comment: C: Extracting a subset of samples following SVA
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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952
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Comment: C: LIMMA Time descendant design
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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1.4k
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Comment: C: How to get results from random intercepts using the limma package?
4.2 years ago Kevin Blighe ★ 4.0k
0
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1
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1.4k
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Comment: C: How to get results from random intercepts using the limma package?
4.2 years ago Kevin Blighe ★ 4.0k
0
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1
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1.3k
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Answer: A: Extracting a subset of samples following SVA
4.2 years ago Kevin Blighe ★ 4.0k
0
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1
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1.5k
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Comment: C: Pathway analysis of bacterial RNA-seq data
4.2 years ago Kevin Blighe ★ 4.0k
1
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1
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1.3k
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Comment: C: how to deal with differential analysis between 3 groups in DESeq2?
4.2 years ago Kevin Blighe ★ 4.0k
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0
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1.9k
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Comment: C: analysis of FACS data using BioC
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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933
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Comment: C: library(rDGIdb) and Error in curl
4.2 years ago Kevin Blighe ★ 4.0k
1
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1
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3.7k
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Comment: C: Comparing DEseq2 and Limma program, results not consistent
4.2 years ago Kevin Blighe ★ 4.0k
1
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1
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1.6k
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Answer: A: R: Find all genes associated with a genomic range
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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7.0k
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Comment: C: biomaRT connexion problem make failed my unit tests
4.2 years ago Kevin Blighe ★ 4.0k
4
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1
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825
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Answer: A: How to design formula
4.2 years ago Kevin Blighe ★ 4.0k
1
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2
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7.0k
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Comment: C: biomaRT connexion problem make failed my unit tests
4.2 years ago Kevin Blighe ★ 4.0k
1
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0
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1.1k
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Answer: A: Deseq2 standard analysis
4.2 years ago Kevin Blighe ★ 4.0k
1
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1
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2.5k
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Comment: C: how to normalize data for rna-seq after limma for heatmap or cox
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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642
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Comment: C: Bugs in package MODA
4.2 years ago Kevin Blighe ★ 4.0k
1
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1
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2.5k
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Answer: A: how to normalize data for rna-seq after limma for heatmap or cox
4.2 years ago Kevin Blighe ★ 4.0k
0
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1
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1.5k
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Comment: C: eQTL analysis using gene expression and SNP data
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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2.0k
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Comment: C: Differential Abundance Analysis wih DESeq2 and metabolites as continuous predict
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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2.1k
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Comment: C: DESeq2 issue with hierarchical clustering
4.2 years ago Kevin Blighe ★ 4.0k
0
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2
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2.1k
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Answer: A: DESeq2 issue with hierarchical clustering
4.2 years ago Kevin Blighe ★ 4.0k
1
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0
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1.5k
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Answer: C: Error with view.molecule.2d function in rcdk
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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2.7k
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Comment: C: TCGA: to extract clinical data from barcode
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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2.2k
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Comment: C: clusterporfiler enrichGO plot
4.2 years ago Kevin Blighe ★ 4.0k
0
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1
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1.9k
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Comment: A: Calculating standard deviation for a few genes using RNAseq data
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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2.6k
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Comment: C: TCGA: clinical data and expression data
4.2 years ago Kevin Blighe ★ 4.0k
0
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1
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2.6k
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Comment: C: TCGA: clinical data and expression data
4.2 years ago Kevin Blighe ★ 4.0k
1
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2
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2.6k
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Answer: A: TCGA: clinical data and expression data
4.2 years ago Kevin Blighe ★ 4.0k
0
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0
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3.0k
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Comment: C: annotation conversion from old microarray to latest Entrez and Ensembl ID
4.2 years ago Kevin Blighe ★ 4.0k
0
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1
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1.3k
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Comment: C: lfcShrink results differ for the same coefficient after relevelling
4.2 years ago Kevin Blighe ★ 4.0k
0
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1
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1.3k
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Comment: A: lfcShrink results differ for the same coefficient after relevelling
4.2 years ago Kevin Blighe ★ 4.0k
1
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0
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1.4k
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Comment: C: Picking the right design formula
4.2 years ago Kevin Blighe ★ 4.0k
1
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1
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1.4k
views
Comment: C: Picking the right design formula
4.2 years ago Kevin Blighe ★ 4.0k
0
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2
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983
views
Answer: A: Favorite plotting tweak for padj=0
4.2 years ago Kevin Blighe ★ 4.0k
889 results • Page 8 of 18
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