Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
0
votes
1
reply
2.9k
views
Answer:
A: Retrieve TCGA expression data for a single gene
3.7 years ago
Kevin Blighe
★ 3.9k
2
votes
1
reply
1.1k
views
Answer:
A: Error in topGO analysis
3.7 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
2.5k
views
Answer:
C: annotation conversion from old microarray to latest Entrez and Ensembl ID
3.7 years ago
Kevin Blighe
★ 3.9k
2
votes
0
replies
4.0k
views
Answer:
A: How do I subset a GRanges object based on chromosome (and approximate region)?
3.7 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
972
views
Answer:
C: How to get multi-factor Deseq LRT test log P values for a particular condition
3.7 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
627
views
Answer:
A: [DESeq2] Sorting results by group variable, missing a contrast?
3.7 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
5.0k
views
Answer:
C: limma::removeBatchEffect into DESeq2
3.7 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
1.9k
views
Answer:
A: Issues with DESeq2 LRT for time-course experiment
3.7 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
3.2k
views
Answer:
A: pointSize, labSize, and DrawConnectors error when plotting EnhancedVolcano
3.7 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
2.2k
views
Answer:
A: Increase text size of axis labels in EnhancedVolcano
3.7 years ago
Kevin Blighe
★ 3.9k
5
votes
1
reply
16k
views
Answer:
A: deseq2 normalized data with heatmap
3.7 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
2.7k
views
Answer:
A: Error in .local(expr, gset.idx.list, ...) : Please install the nnotation pack
3.7 years ago
Kevin Blighe
★ 3.9k
2
votes
1
reply
2.9k
views
Answer:
A: How to incorporate batch effect that is only present in one level into the desig
3.8 years ago • updated 3.7 years ago
Kevin Blighe
★ 3.9k
0
votes
2
replies
2.6k
views
Answer:
A: visualize significant upregultaed genes and downregultaed genes with different c
3.8 years ago
Kevin Blighe
★ 3.9k
1
vote
2
replies
1.6k
views
Answer:
A: Comparing discrete variable to PCA
3.8 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.3k
views
Answer:
A: Warning messages: gseaKEGG
3.8 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
854
views
Answer:
A: Time series RNA-Seq data analysis using DESEQ2
3.8 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
4.5k
views
Answer:
A: Help in installing certain pacakges
3.8 years ago
Kevin Blighe
★ 3.9k
1
vote
0
replies
2.0k
views
Answer:
A: ensembl to hgnc symbols creates duplicates
3.8 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
8.1k
views
Answer:
A: Deconvolution with CIBERSORT: input data
3.8 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
247
views
Answer:
C: Normalising allele-specific reads from RNA seq
3.8 years ago
Kevin Blighe
★ 3.9k
1
vote
2
replies
1.7k
views
Answer:
C: TCGABiolinks downloaded data do not match GDC portal data
3.8 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.5k
views
Answer:
A: StringTie output as Ballgown input
3.8 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
587
views
Answer:
A: Input of tscR
3.8 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
874
views
Answer:
A: how to paralelize this R script in a HPC cluster using Slurm Workload Manager?
3.8 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
1.5k
views
Answer:
A: DEqMS make contrasts - non-valid names
3.8 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.1k
views
Answer:
A: Multiple plots in different windows
3.8 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.1k
views
Answer:
A: DRIMSeq with technical replicates
3.8 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
5.9k
views
Answer:
A: topGO error: allGenes should be a factor or a numeric vector
3.8 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
2.6k
views
Answer:
Answer: Convert mouse gene ids to hamster gene ids
3.8 years ago • updated 15 months ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
1.1k
views
Answer:
A: Genes upregulated in one condition vs each of the other conditions
3.8 years ago
Kevin Blighe
★ 3.9k
2
votes
0
replies
2.5k
views
Answer:
A: How to convert 1000 genomes VCF files to the format of traditional SNP array for
3.9 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
592
views
Answer:
C: DESeq2 nested interaction and individual batch correction question
3.9 years ago
Kevin Blighe
★ 3.9k
1
vote
0
replies
396
views
Answer:
A: Cannot install DeSeq on RStudio version 6.3.2
3.9 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
2.9k
views
Answer:
A: How to customize the color in 'plot_cell_trajectory' function
3.9 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
792
views
Answer:
A: stuck in "Finding nonparametric adjustments" with MethylMix package.
3.9 years ago
Kevin Blighe
★ 3.9k
1
vote
0
replies
498
views
Answer:
C: Obtain Protein-Protein Interaction (PPI) table from a list of Gene IDs in R or
3.9 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
3.2k
views
Answer:
A: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.9 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
865
views
Answer:
A: ropls package: Recreating scores calculation from an OPLS-DA model
3.9 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.6k
views
Answer:
C: ReactomePA error graph
3.9 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
4.0k
views
Answer:
A: ggplot2 of PCA
3.9 years ago
Kevin Blighe
★ 3.9k
3
votes
2
replies
6.5k
views
Answer:
A: pltPCA in DESeq2
3.9 years ago
Kevin Blighe
★ 3.9k
2
votes
1
reply
2.1k
views
Answer:
A: is there a function in edger the same as vst or rlog in deseq2
3.9 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
760
views
Answer:
A: DEXSEQ error (no counts falling in this gene, there is nothing to plot).
3.9 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
601
views
Answer:
C: DEXSeq Illegal Strand Error
3.9 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
799
views
Answer:
A: Highlight uniq transcripts in Gviz
3.9 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
796
views
Answer:
A: Differential analysis of protein spectral counts using msnSet object
3.9 years ago
Kevin Blighe
★ 3.9k
1
vote
3
replies
958
views
Answer:
A: scRNA-seq question, assayData() error
4.0 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
897
views
Answer:
C: DEseq2 2x2 design using a grouping variable
4.0 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.0k
views
Answer:
A: DESeq2: error message
4.0 years ago
Kevin Blighe
★ 3.9k
301 results • Page
4 of 7
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6