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Answer: Answer: Design Formula, PCA, and Sex Effect
2.9 years ago Kevin Blighe ★ 3.9k
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11k
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Answer: Answer: Can't able to install Seurat in Rstudio
2.9 years ago Kevin Blighe ★ 3.9k
2
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16k
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Answer: Answer: DESeqDataSetFromMatrix
2.9 years ago Kevin Blighe ★ 3.9k
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2.3k
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Answer: Answer: Plotting FPKM
2.9 years ago Kevin Blighe ★ 3.9k
2
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1
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3.6k
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Answer: Answer: Interpreting ellipses in PCAtools for bulk RNAseq
3.0 years ago Kevin Blighe ★ 3.9k
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2
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1.1k
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Answer: Answer: need help regarding differential expression analysis
3.0 years ago Kevin Blighe ★ 3.9k
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867
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Answer: Answer: ENSEMBL records not complete in org.Mm.eg.db?
3.0 years ago Kevin Blighe ★ 3.9k
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1
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6.5k
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Answer: Answer: Problems installing DESeq2
3.0 years ago Kevin Blighe ★ 3.9k
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1.2k
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Answer: Answer: how to fix error: object 'gsg' not found ?
3.0 years ago Kevin Blighe ★ 3.9k
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1.3k
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Answer: Answer: How do I adjust for other factors in Limma differential expression analysis?
3.0 years ago Kevin Blighe ★ 3.9k
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986
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Answer: Answer: Subscript out of bounds while normalising using affy::rma()
3.0 years ago Kevin Blighe ★ 3.9k
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1
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3.2k
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Answer: Answer: Unable to install packages on MacOS
3.0 years ago Kevin Blighe ★ 3.9k
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1
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1.1k
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Answer: Answer: Need help in running GO analysis
3.0 years ago Kevin Blighe ★ 3.9k
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1.2k
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Answer: Answer: Cannot install anything through BiocManager::install()
3.0 years ago Kevin Blighe ★ 3.9k
1
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0
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914
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Answer: Answer: How to make OrgPackage (BSgenome data) package available for R Bioconductor user
3.0 years ago Kevin Blighe ★ 3.9k
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1
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1.5k
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Answer: Answer: Need help in determing upregulated and downregulated genes
3.0 years ago Kevin Blighe ★ 3.9k
1
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0
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560
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Answer: Answer: problem regarding bioconducter package installation
3.0 years ago Kevin Blighe ★ 3.9k
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0
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1.1k
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Answer: Answer: cannot open URL 'https://bioconductor.org/biocLite.R': HTTP status was '429 Unkn
3.0 years ago Kevin Blighe ★ 3.9k
1
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1
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1.2k
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Answer: Answer: Ensemble site connection error
3.0 years ago Kevin Blighe ★ 3.9k
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1
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2.7k
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Answer: Answer: Deseq2 - removing batch effect
3.0 years ago Kevin Blighe ★ 3.9k
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1
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2.1k
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Answer: Answer: How to exclude outlier (Microarray ) from PCA in R
3.0 years ago Kevin Blighe ★ 3.9k
2
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1
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2.1k
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Answer: Answer: Complex Heatmap shows just one color
3.1 years ago Kevin Blighe ★ 3.9k
2
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1
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692
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Answer: Answer: Biomart Errors
3.1 years ago Kevin Blighe ★ 3.9k
3
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6.5k
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Answer: Answer: Warning in EnhancedVolcano plot
3.1 years ago Kevin Blighe ★ 3.9k
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4.2k
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Answer: Answer: DESeq problems
3.1 years ago Kevin Blighe ★ 3.9k
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3.9k
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Answer: Answer: EnhancedVolcano plot with colCustom
3.1 years ago Kevin Blighe ★ 3.9k
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2.2k
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Answer: Answer: Enhanced Volcano Plot Controlling Color Layers
3.1 years ago Kevin Blighe ★ 3.9k
2
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2
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3.1k
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Answer: Answer: DESeq2 two conditions with interaction
3.1 years ago Kevin Blighe ★ 3.9k
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743
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Answer: Answer: Outliers
3.1 years ago Kevin Blighe ★ 3.9k
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0
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788
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Answer: Answer: Error in read.table function using multiclust
3.1 years ago Kevin Blighe ★ 3.9k
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0
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767
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Answer: Answer: log transformation the eset
3.1 years ago Kevin Blighe ★ 3.9k
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1
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1.3k
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Answer: Answer: TCGA data analysis
3.1 years ago Kevin Blighe ★ 3.9k
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1
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1.3k
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Answer: Answer: Issue loading data with tximeta
3.1 years ago Kevin Blighe ★ 3.9k
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1.2k
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Answer: Answer: while doing co-expression network analysis, I am getting an error
3.1 years ago Kevin Blighe ★ 3.9k
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2.9k
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Answer: Answer: Error with hclust
3.1 years ago Kevin Blighe ★ 3.9k
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2
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3.5k
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Answer: Answer: error reading from connection (Error in load(url(con)))
3.1 years ago Kevin Blighe ★ 3.9k
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0
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679
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Answer: Answer: DEseq2 for analysis of time points
3.1 years ago Kevin Blighe ★ 3.9k
2
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1
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838
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Answer: Answer: PCAtools lables missing or out of the plot
3.1 years ago Kevin Blighe ★ 3.9k
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1
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4.2k
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Answer: Answer: Convert Agilent Probe ID to gene IDs/Symbols
3.1 years ago Kevin Blighe ★ 3.9k
2
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0
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979
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Answer: Answer: GSEA generate genesets
3.1 years ago Kevin Blighe ★ 3.9k
2
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1
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902
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Answer: Answer: DESEQ object filter
3.1 years ago Kevin Blighe ★ 3.9k
2
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1
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746
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Answer: Answer: DeSeq2 design for sgRNA fold-change
3.1 years ago Kevin Blighe ★ 3.9k
5
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1
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11k
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Answer: Answer: How to use combat in order to remove batch effects?
3.2 years ago Kevin Blighe ★ 3.9k
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1
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1.9k
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Answer: Answer: ComBat Normalisation - data is integers and some floats, confused?!
3.2 years ago Kevin Blighe ★ 3.9k
3
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0
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28k
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Answer: Answer: DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
3.2 years ago Kevin Blighe ★ 3.9k
1
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0
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6.1k
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Answer: Answer: DESeq2 - multifactorial design
3.2 years ago Kevin Blighe ★ 3.9k
0
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0
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2.4k
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Answer: Answer: Can you colour dendrogram branch clusters in pheatmap?
3.2 years ago Kevin Blighe ★ 3.9k
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1
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1.2k
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Answer: Answer: Same methylation probe ID with different locus annotations in Illumina 27k and 4
3.2 years ago Kevin Blighe ★ 3.9k
2
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1
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1.3k
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Answer: Answer: DEseq2 results
3.2 years ago Kevin Blighe ★ 3.9k
0
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0
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2.0k
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Answer: Answer: How to plot the RMA log2 normalised data from Affymetrix
3.2 years ago Kevin Blighe ★ 3.9k
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