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Answer: Answer: analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
3.2 years ago Kevin Blighe ★ 3.9k
1
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1
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1.1k
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Answer: Answer: How to define settings for design primers with openPrimeR?
3.2 years ago Kevin Blighe ★ 3.9k
0
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1
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1.6k
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Answer: Answer: WGCNA - Outliers after creating sample tree
3.2 years ago Kevin Blighe ★ 3.9k
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0
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1.1k
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Answer: Comment: Differential Network analysis
3.2 years ago Kevin Blighe ★ 3.9k
1
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0
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848
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Answer: Answer: Error running ensembl via Biomart disk I/O error
3.2 years ago Kevin Blighe ★ 3.9k
1
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0
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1.1k
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Answer: Answer: DESeq2 in R
3.3 years ago Kevin Blighe ★ 3.9k
0
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1
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433
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Answer: Answer: DESeq2
3.3 years ago Kevin Blighe ★ 3.9k
0
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1
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2.1k
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Answer: Comment: How can I use bioconductor and Deseq2 in linux ubuntu 18
3.3 years ago Kevin Blighe ★ 3.9k
0
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0
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816
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Answer: Answer: library(TCGAbiolinks)
3.3 years ago Kevin Blighe ★ 3.9k
1
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1
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6.3k
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Answer: Answer: DEseq2 comparison order
3.3 years ago Kevin Blighe ★ 3.9k
2
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1
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2.6k
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Answer: Answer: PCAtools - change colour of points
3.3 years ago Kevin Blighe ★ 3.9k
0
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2
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1.4k
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Answer: Answer: Error in running Combat function
3.3 years ago Kevin Blighe ★ 3.9k
2
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1
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2.0k
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Answer: Answer: How to better design a Volcano plot
3.3 years ago Kevin Blighe ★ 3.9k
1
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1
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7.5k
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Answer: Answer: DESeq2: Multiple Comparisons with Different Conditions and Replicates
3.4 years ago Kevin Blighe ★ 3.9k
2
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1
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2.0k
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Answer: Answer: Extract canonical coding sequence with getBM
3.4 years ago Kevin Blighe ★ 3.9k
0
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1
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3.4k
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Answer: Answer: Problem selectively labelling points in the Enhanced Volcano package
3.4 years ago Kevin Blighe ★ 3.9k
0
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0
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3.2k
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Answer: Answer: How to ellipse a subset of data PCA biplot?
3.4 years ago Kevin Blighe ★ 3.9k
1
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1
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611
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Answer: Answer: Rename rownames(res) manually
3.4 years ago Kevin Blighe ★ 3.9k
0
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0
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931
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Answer: Answer: Export sample data to excel after taxonamy assignment
3.4 years ago Kevin Blighe ★ 3.9k
2
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1
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2.3k
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Answer: Answer: Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some o
3.4 years ago Kevin Blighe ★ 3.9k
0
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0
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1.7k
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Answer: Answer: Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
3.5 years ago Kevin Blighe ★ 3.9k
0
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0
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634
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Answer: Answer: a BioC/R package that display the genome sequence/ mRNA exons/protein domains
3.5 years ago Kevin Blighe ★ 3.9k
0
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1
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1.5k
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Answer: Comment: Create `Copy Number Array' Data Object error
3.5 years ago Kevin Blighe ★ 3.9k
0
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1
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1.6k
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Answer: Answer: Use of RSEM counts in WGCNA
3.5 years ago Kevin Blighe ★ 3.9k
0
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0
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730
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Answer: Answer: p adjusted value not available
3.5 years ago Kevin Blighe ★ 3.9k
1
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1
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6.6k
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Answer: Answer: problem in installing Bio conductor package
3.5 years ago Kevin Blighe ★ 3.9k
2
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1
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1.9k
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Answer: Answer: lfcshrink() with no coef in resultsNames()
3.5 years ago Kevin Blighe ★ 3.9k
0
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0
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924
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Answer: Comment: How to use tx import on output of abundance file
3.5 years ago Kevin Blighe ★ 3.9k
0
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0
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8.3k
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Answer: Answer: BiomaRt::getBM Error in UseMethod(filter_)
3.5 years ago Kevin Blighe ★ 3.9k
2
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0
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621
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Answer: Answer: How to extract top DEG and their sample values
3.5 years ago Kevin Blighe ★ 3.9k
1
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0
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499
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Answer: Comment: correlation analysis
3.5 years ago Kevin Blighe ★ 3.9k
2
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1
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2.8k
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Answer: Answer: enhancedVolcano: Why are only a few of my select labels showing up?
3.5 years ago Kevin Blighe ★ 3.9k
1
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1
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1.4k
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Answer: A: PCATools: is it possible to output a single legend when using pairsplot()?
3.6 years ago Kevin Blighe ★ 3.9k
0
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1
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1.1k
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Answer: A: Extracting a subset of samples following SVA
3.6 years ago Kevin Blighe ★ 3.9k
1
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1
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1.3k
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Answer: A: R: Find all genes associated with a genomic range
3.6 years ago Kevin Blighe ★ 3.9k
4
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1
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666
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Answer: A: How to design formula
3.6 years ago Kevin Blighe ★ 3.9k
1
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0
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962
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Answer: A: Deseq2 standard analysis
3.6 years ago Kevin Blighe ★ 3.9k
1
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1
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2.1k
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Answer: A: how to normalize data for rna-seq after limma for heatmap or cox
3.6 years ago Kevin Blighe ★ 3.9k
0
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2
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1.7k
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Answer: A: DESeq2 issue with hierarchical clustering
3.6 years ago Kevin Blighe ★ 3.9k
1
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0
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1.3k
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Answer: C: Error with view.molecule.2d function in rcdk
3.6 years ago Kevin Blighe ★ 3.9k
1
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2
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2.1k
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Answer: A: TCGA: clinical data and expression data
3.6 years ago Kevin Blighe ★ 3.9k
0
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2
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825
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Answer: A: Favorite plotting tweak for padj=0
3.7 years ago Kevin Blighe ★ 3.9k
0
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1
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7.0k
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Answer: A: Trying to do a PCA using edgeR with expression data
3.7 years ago Kevin Blighe ★ 3.9k
0
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1
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1.7k
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Answer: A: EnhancedVolcano - highlight specific points by changing shape
3.7 years ago Kevin Blighe ★ 3.9k
2
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0
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665
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Answer: A: Which test fits the best here
3.7 years ago Kevin Blighe ★ 3.9k
0
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1
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3.8k
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Answer: A: Can't install package oligoClasses
3.7 years ago Kevin Blighe ★ 3.9k
0
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1
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3.5k
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Answer: A: BiocLite installation issues
3.7 years ago Kevin Blighe ★ 3.9k
2
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1
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7.8k
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Answer: A: how to understand cpm=1 and how filterByExpr works?
3.7 years ago Kevin Blighe ★ 3.9k
0
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2
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527
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Answer: C: How to create the loop object?
3.7 years ago Kevin Blighe ★ 3.9k
0
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0
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436
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Answer: A: do cox and km plot
3.7 years ago Kevin Blighe ★ 3.9k
301 results • Page 3 of 7
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