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Answer: A: Retrieve TCGA expression data for a single gene
3.7 years ago Kevin Blighe ★ 3.9k
2
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1
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1.1k
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Answer: A: Error in topGO analysis
3.7 years ago Kevin Blighe ★ 3.9k
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1
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2.5k
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Answer: C: annotation conversion from old microarray to latest Entrez and Ensembl ID
3.7 years ago Kevin Blighe ★ 3.9k
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4.0k
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Answer: A: How do I subset a GRanges object based on chromosome (and approximate region)?
3.7 years ago Kevin Blighe ★ 3.9k
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972
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Answer: C: How to get multi-factor Deseq LRT test log P values for a particular condition
3.7 years ago Kevin Blighe ★ 3.9k
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627
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Answer: A: [DESeq2] Sorting results by group variable, missing a contrast?
3.7 years ago Kevin Blighe ★ 3.9k
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1
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5.0k
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Answer: C: limma::removeBatchEffect into DESeq2
3.7 years ago Kevin Blighe ★ 3.9k
1
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1
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1.9k
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Answer: A: Issues with DESeq2 LRT for time-course experiment
3.7 years ago Kevin Blighe ★ 3.9k
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3.2k
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Answer: A: pointSize, labSize, and DrawConnectors error when plotting EnhancedVolcano
3.7 years ago Kevin Blighe ★ 3.9k
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2.2k
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Answer: A: Increase text size of axis labels in EnhancedVolcano
3.7 years ago Kevin Blighe ★ 3.9k
5
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16k
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Answer: A: deseq2 normalized data with heatmap
3.7 years ago Kevin Blighe ★ 3.9k
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1
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2.7k
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Answer: A: Error in .local(expr, gset.idx.list, ...) : Please install the nnotation pack
3.7 years ago Kevin Blighe ★ 3.9k
2
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1
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2.9k
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Answer: A: How to incorporate batch effect that is only present in one level into the desig
3.7 years ago Kevin Blighe ★ 3.9k
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2
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2.6k
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Answer: A: visualize significant upregultaed genes and downregultaed genes with different c
3.7 years ago Kevin Blighe ★ 3.9k
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2
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1.6k
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Answer: A: Comparing discrete variable to PCA
3.8 years ago Kevin Blighe ★ 3.9k
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1
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1.3k
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Answer: A: Warning messages: gseaKEGG
3.8 years ago Kevin Blighe ★ 3.9k
1
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1
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854
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Answer: A: Time series RNA-Seq data analysis using DESEQ2
3.8 years ago Kevin Blighe ★ 3.9k
1
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1
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4.5k
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Answer: A: Help in installing certain pacakges
3.8 years ago Kevin Blighe ★ 3.9k
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0
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2.0k
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Answer: A: ensembl to hgnc symbols creates duplicates
3.8 years ago Kevin Blighe ★ 3.9k
0
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1
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8.1k
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Answer: A: Deconvolution with CIBERSORT: input data
3.8 years ago Kevin Blighe ★ 3.9k
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0
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247
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Answer: C: Normalising allele-specific reads from RNA seq
3.8 years ago Kevin Blighe ★ 3.9k
1
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2
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1.7k
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Answer: C: TCGABiolinks downloaded data do not match GDC portal data
3.8 years ago Kevin Blighe ★ 3.9k
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1.5k
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Answer: A: StringTie output as Ballgown input
3.8 years ago Kevin Blighe ★ 3.9k
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0
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587
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Answer: A: Input of tscR
3.8 years ago Kevin Blighe ★ 3.9k
0
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0
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874
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Answer: A: how to paralelize this R script in a HPC cluster using Slurm Workload Manager?
3.8 years ago Kevin Blighe ★ 3.9k
1
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1
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1.5k
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Answer: A: DEqMS make contrasts - non-valid names
3.8 years ago Kevin Blighe ★ 3.9k
0
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1
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1.1k
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Answer: A: Multiple plots in different windows
3.8 years ago Kevin Blighe ★ 3.9k
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1
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1.1k
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Answer: A: DRIMSeq with technical replicates
3.8 years ago Kevin Blighe ★ 3.9k
1
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1
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5.9k
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Answer: A: topGO error: allGenes should be a factor or a numeric vector
3.8 years ago Kevin Blighe ★ 3.9k
1
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1
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2.6k
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Answer: Answer: Convert mouse gene ids to hamster gene ids
3.8 years ago • updated 15 months ago Kevin Blighe ★ 3.9k
1
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1
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1.1k
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Answer: A: Genes upregulated in one condition vs each of the other conditions
3.8 years ago Kevin Blighe ★ 3.9k
2
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0
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2.5k
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Answer: A: How to convert 1000 genomes VCF files to the format of traditional SNP array for
3.9 years ago Kevin Blighe ★ 3.9k
1
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1
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592
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Answer: C: DESeq2 nested interaction and individual batch correction question
3.9 years ago Kevin Blighe ★ 3.9k
1
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0
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396
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Answer: A: Cannot install DeSeq on RStudio version 6.3.2
3.9 years ago Kevin Blighe ★ 3.9k
0
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0
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2.9k
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Answer: A: How to customize the color in 'plot_cell_trajectory' function
3.9 years ago Kevin Blighe ★ 3.9k
0
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0
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792
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Answer: A: stuck in "Finding nonparametric adjustments" with MethylMix package.
3.9 years ago Kevin Blighe ★ 3.9k
1
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0
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498
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Answer: C: Obtain Protein-Protein Interaction (PPI) table from a list of Gene IDs in R or
3.9 years ago Kevin Blighe ★ 3.9k
1
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1
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3.2k
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Answer: A: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.9 years ago Kevin Blighe ★ 3.9k
0
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0
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865
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Answer: A: ropls package: Recreating scores calculation from an OPLS-DA model
3.9 years ago Kevin Blighe ★ 3.9k
0
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1
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1.6k
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Answer: C: ReactomePA error graph
3.9 years ago Kevin Blighe ★ 3.9k
0
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1
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3.9k
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Answer: A: ggplot2 of PCA
3.9 years ago Kevin Blighe ★ 3.9k
3
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2
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6.5k
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Answer: A: pltPCA in DESeq2
3.9 years ago Kevin Blighe ★ 3.9k
2
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1
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2.1k
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Answer: A: is there a function in edger the same as vst or rlog in deseq2
3.9 years ago Kevin Blighe ★ 3.9k
0
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1
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760
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Answer: A: DEXSEQ error (no counts falling in this gene, there is nothing to plot).
3.9 years ago Kevin Blighe ★ 3.9k
0
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1
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601
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Answer: C: DEXSeq Illegal Strand Error
3.9 years ago Kevin Blighe ★ 3.9k
1
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1
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799
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Answer: A: Highlight uniq transcripts in Gviz
3.9 years ago Kevin Blighe ★ 3.9k
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0
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796
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Answer: A: Differential analysis of protein spectral counts using msnSet object
3.9 years ago Kevin Blighe ★ 3.9k
1
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3
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957
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Answer: A: scRNA-seq question, assayData() error
3.9 years ago Kevin Blighe ★ 3.9k
0
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1
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897
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Answer: C: DEseq2 2x2 design using a grouping variable
4.0 years ago Kevin Blighe ★ 3.9k
0
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0
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1.0k
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Answer: A: DESeq2: error message
4.0 years ago Kevin Blighe ★ 3.9k
301 results • Page 4 of 7
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