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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
5 months ago Gordon Smyth 53k
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5.7k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
5 months ago Gordon Smyth 53k
2
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1
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5.7k
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Answer: Answer: competitive enrichment test yields too few significant results, self-contained t
5 months ago Gordon Smyth 53k
0
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0
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1.4k
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Answer: Answer: How to avoid losing a sample as reference running an individual differential exp
5 months ago Gordon Smyth 53k
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Comment: Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
6 months ago Gordon Smyth 53k
0
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1
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Comment: Comment: I would like to perform differential expression analysis of lncRNAs using DESeq2
6 months ago Gordon Smyth 53k
0
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2.4k
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Answer: Answer: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
6 months ago Gordon Smyth 53k
1
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1
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3.3k
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Answer: Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2
6 months ago Gordon Smyth 53k
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3.8k
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Answer: Answer: Is voomByGroup available in limma?
6 months ago Gordon Smyth 53k
0
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1.8k
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Answer: Answer: How to use goana function with zebrafish genome from org.Dr.eg.db
6 months ago Gordon Smyth 53k
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Comment: Comment: How to use goana function with zebrafish genome from org.Dr.eg.db
6 months ago Gordon Smyth 53k
0
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365
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Job: Lab Head positions at the WEHI, Melbourne, Australia
JobPosting Bioconductor
7 months ago Gordon Smyth 53k
3
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6.4k
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Answer: Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
7 months ago Gordon Smyth 53k
1
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2.7k
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Comment: Comment: Altered (negative or positive) logFC values for same gene from two intitial coun
7 months ago Gordon Smyth 53k
1
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2.7k
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Answer: Answer: Altered (negative or positive) logFC values for same gene from two intitial coun
7 months ago Gordon Smyth 53k
0
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Comment: Comment: Differential gene expression analysis on haplotype-resolved diploid assembly
7 months ago Gordon Smyth 53k
2
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1.5k
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Answer: Answer: Differential gene expression analysis on haplotype-resolved diploid assembly
7 months ago Gordon Smyth 53k
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3.4k
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Comment: Comment: parameters of filterByExpr
7 months ago Gordon Smyth 53k
0
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918
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Answer: Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi
7 months ago Gordon Smyth 53k
0
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502
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Answer: Answer: Typo in the help of lmFit()
7 months ago Gordon Smyth 53k
0
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693
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Answer: Answer: Limma suqeezeVar
7 months ago Gordon Smyth 53k
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1.3k
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Answer: Answer: Limma trend with limpa
7 months ago Gordon Smyth 53k
1
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3.4k
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Comment: Comment: Check removeBatchEffect effectiveness
7 months ago Gordon Smyth 53k
1
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1
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5.2k
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Comment: Comment: limma::voom vs edgeR::voomLmFit - when to use?
7 months ago Gordon Smyth 53k
0
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6.0k
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Comment: Comment: How to load scRNA-seq data from GEO
7 months ago Gordon Smyth 53k
1
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6.0k
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Comment: Comment: How to load scRNA-seq data from GEO
7 months ago Gordon Smyth 53k
0
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3.4k
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Comment: Comment: limma correction for tumor purity
7 months ago Gordon Smyth 53k
1
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1.3k
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Comment: Comment: Dealing with heteroscedascity in limma
8 months ago Gordon Smyth 53k
0
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1
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6.0k
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Comment: Comment: How to load scRNA-seq data from GEO
8 months ago Gordon Smyth 53k
1
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3
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3.4k
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Answer: Answer: limma correction for tumor purity
8 months ago • updated 7 months ago Gordon Smyth 53k
1
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1.3k
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Answer: Answer: Dealing with heteroscedascity in limma
8 months ago Gordon Smyth 53k
0
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1
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3.4k
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Comment: Comment: Check removeBatchEffect effectiveness
8 months ago Gordon Smyth 53k
0
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1
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6.0k
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Answer: Answer: How to load scRNA-seq data from GEO
8 months ago Gordon Smyth 53k
0
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3.4k
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Comment: Comment: parameters of filterByExpr
8 months ago Gordon Smyth 53k
0
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1
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3.4k
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Comment: Comment: parameters of filterByExpr
8 months ago Gordon Smyth 53k
3
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1
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3.4k
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Answer: Answer: parameters of filterByExpr
8 months ago Gordon Smyth 53k
1
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1
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3.4k
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Answer: Answer: Check removeBatchEffect effectiveness
8 months ago Gordon Smyth 53k
2
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736
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Answer: Answer: ROAST for small sets
8 months ago Gordon Smyth 53k
1
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0
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2.9k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
8 months ago Gordon Smyth 53k
2
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2
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2.9k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
8 months ago Gordon Smyth 53k
2
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1
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2.9k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
8 months ago Gordon Smyth 53k
2
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0
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1.9k
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Answer: Answer: how to use `arrayWeightsQuick()`?
8 months ago Gordon Smyth 53k
0
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1
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1.9k
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Comment: Comment: how to use `arrayWeightsQuick()`?
8 months ago Gordon Smyth 53k
0
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1
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1.0k
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Answer: Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
8 months ago Gordon Smyth 53k
2
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0
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1.5k
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Answer: Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
9 months ago Gordon Smyth 53k
1
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0
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1.3k
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Comment: Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
9 months ago Gordon Smyth 53k
3
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1
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1.3k
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Answer: Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
9 months ago Gordon Smyth 53k
0
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0
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469
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Answer: Answer: Is it possible to model DNA methylation as a dose response in edgeR?
10 months ago Gordon Smyth 53k
1
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1
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1.5k
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Comment: Comment: Use of limma R package with targeted proteomics for DE analysis
10 months ago Gordon Smyth 53k
0
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0
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707
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Answer: Answer: cameraPR() non directional test
10 months ago Gordon Smyth 53k
5,315 results • Page 2 of 107
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