Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
3.3k
views
Answer: Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2
5 months ago Gordon Smyth 53k
1
vote
1
reply
3.8k
views
Answer: Answer: Is voomByGroup available in limma?
5 months ago Gordon Smyth 53k
0
votes
1
reply
1.8k
views
Answer: Answer: How to use goana function with zebrafish genome from org.Dr.eg.db
5 months ago Gordon Smyth 53k
0
votes
1
reply
1.8k
views
Comment: Comment: How to use goana function with zebrafish genome from org.Dr.eg.db
5 months ago Gordon Smyth 53k
0
votes
0
replies
341
views
Job: Lab Head positions at the WEHI, Melbourne, Australia
JobPosting Bioconductor
6 months ago Gordon Smyth 53k
3
votes
1
reply
6.4k
views
Answer: Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
6 months ago Gordon Smyth 53k
1
vote
1
reply
2.7k
views
Comment: Comment: Altered (negative or positive) logFC values for same gene from two intitial coun
6 months ago Gordon Smyth 53k
1
vote
1
reply
2.7k
views
Answer: Answer: Altered (negative or positive) logFC values for same gene from two intitial coun
6 months ago Gordon Smyth 53k
0
votes
0
replies
1.5k
views
Comment: Comment: Differential gene expression analysis on haplotype-resolved diploid assembly
6 months ago Gordon Smyth 53k
2
votes
1
reply
1.5k
views
Answer: Answer: Differential gene expression analysis on haplotype-resolved diploid assembly
6 months ago Gordon Smyth 53k
0
votes
1
reply
3.3k
views
Comment: Comment: parameters of filterByExpr
6 months ago Gordon Smyth 53k
0
votes
0
replies
883
views
Answer: Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi
6 months ago Gordon Smyth 53k
0
votes
0
replies
485
views
Answer: Answer: Typo in the help of lmFit()
6 months ago Gordon Smyth 53k
0
votes
1
reply
669
views
Answer: Answer: Limma suqeezeVar
6 months ago Gordon Smyth 53k
0
votes
1
reply
1.3k
views
Answer: Answer: Limma trend with limpa
6 months ago Gordon Smyth 53k
1
vote
1
reply
3.3k
views
Comment: Comment: Check removeBatchEffect effectiveness
6 months ago Gordon Smyth 53k
1
vote
1
reply
5.1k
views
Comment: Comment: limma::voom vs edgeR::voomLmFit - when to use?
6 months ago Gordon Smyth 53k
0
votes
0
replies
5.8k
views
Comment: Comment: How to load scRNA-seq data from GEO
7 months ago Gordon Smyth 53k
1
vote
0
replies
5.8k
views
Comment: Comment: How to load scRNA-seq data from GEO
7 months ago Gordon Smyth 53k
0
votes
1
reply
3.4k
views
Comment: Comment: limma correction for tumor purity
7 months ago Gordon Smyth 53k
1
vote
1
reply
1.2k
views
Comment: Comment: Dealing with heteroscedascity in limma
7 months ago Gordon Smyth 53k
0
votes
1
reply
5.8k
views
Comment: Comment: How to load scRNA-seq data from GEO
7 months ago Gordon Smyth 53k
1
vote
3
replies
3.4k
views
Answer: Answer: limma correction for tumor purity
7 months ago Gordon Smyth 53k
1
vote
1
reply
1.2k
views
Answer: Answer: Dealing with heteroscedascity in limma
7 months ago Gordon Smyth 53k
0
votes
1
reply
3.3k
views
Comment: Comment: Check removeBatchEffect effectiveness
7 months ago Gordon Smyth 53k
0
votes
1
reply
5.8k
views
Answer: Answer: How to load scRNA-seq data from GEO
7 months ago Gordon Smyth 53k
0
votes
1
reply
3.3k
views
Comment: Comment: parameters of filterByExpr
7 months ago Gordon Smyth 53k
0
votes
1
reply
3.3k
views
Comment: Comment: parameters of filterByExpr
7 months ago Gordon Smyth 53k
3
votes
1
reply
3.3k
views
Answer: Answer: parameters of filterByExpr
7 months ago Gordon Smyth 53k
1
vote
1
reply
3.3k
views
Answer: Answer: Check removeBatchEffect effectiveness
7 months ago Gordon Smyth 53k
2
votes
0
replies
702
views
Answer: Answer: ROAST for small sets
7 months ago Gordon Smyth 53k
1
vote
0
replies
2.7k
views
Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
7 months ago Gordon Smyth 53k
2
votes
2
replies
2.7k
views
Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
7 months ago Gordon Smyth 53k
2
votes
1
reply
2.7k
views
Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
7 months ago Gordon Smyth 53k
2
votes
0
replies
1.9k
views
Answer: Answer: how to use `arrayWeightsQuick()`?
8 months ago Gordon Smyth 53k
0
votes
1
reply
1.9k
views
Comment: Comment: how to use `arrayWeightsQuick()`?
8 months ago Gordon Smyth 53k
0
votes
1
reply
992
views
Answer: Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
8 months ago Gordon Smyth 53k
2
votes
0
replies
1.5k
views
Answer: Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
8 months ago Gordon Smyth 53k
1
vote
0
replies
1.2k
views
Comment: Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
8 months ago Gordon Smyth 53k
3
votes
1
reply
1.2k
views
Answer: Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
8 months ago Gordon Smyth 53k
0
votes
0
replies
448
views
Answer: Answer: Is it possible to model DNA methylation as a dose response in edgeR?
9 months ago Gordon Smyth 53k
1
vote
1
reply
1.5k
views
Comment: Comment: Use of limma R package with targeted proteomics for DE analysis
9 months ago Gordon Smyth 53k
0
votes
0
replies
691
views
Answer: Answer: cameraPR() non directional test
9 months ago Gordon Smyth 53k
1
vote
1
reply
1.5k
views
Answer: Answer: Use of limma R package with targeted proteomics for DE analysis
9 months ago Gordon Smyth 53k
0
votes
0
replies
962
views
Answer: Answer: To count or not to count multi-overlapping reads?
9 months ago Gordon Smyth 53k
1
vote
1
reply
915
views
Answer: Answer: EdgeR Biological CVs
10 months ago Gordon Smyth 53k
1
vote
0
replies
808
views
Answer: Answer: Differential variability modelling with vst() expression
11 months ago Gordon Smyth 53k
0
votes
1
reply
1.6k
views
Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
11 months ago Gordon Smyth 53k
0
votes
1
reply
716
views
Answer: Answer: Mean variance curve troubleshoot filtering
11 months ago Gordon Smyth 53k
1
vote
1
reply
1.1k
views
Comment: Comment: How do I fix an odd voom plot in a combined dataset?
11 months ago Gordon Smyth 53k
5,308 results • Page 2 of 107
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6