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Answer: Answer: RNASeq normlization for samples with global shift in gene expression
3 months ago Gordon Smyth 52k
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521
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Answer: Answer: Differential expression analysis in time course experiments with DESeq2
3 months ago Gordon Smyth 52k
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1
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564
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Answer: Answer: using limma trend workflow in CAMERA
3 months ago Gordon Smyth 52k
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532
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Comment: Comment: One-sided tests with CAMERA-PR
3 months ago Gordon Smyth 52k
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532
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Answer: Answer: One-sided tests with CAMERA-PR
3 months ago Gordon Smyth 52k
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484
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Answer: Answer: comparing common differentially expressed genes from two Rna-Seq Dataset.
3 months ago Gordon Smyth 52k
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499
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Answer: Answer: RUV - Does my data need further normalisation?
3 months ago Gordon Smyth 52k
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360
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Answer: Answer: edgeR - design a complex matrix
3 months ago Gordon Smyth 52k
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547
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Answer: Answer: Optimizing CPM Calculation for Varied RNA-seq Data
3 months ago Gordon Smyth 52k
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678
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Comment: Comment: how limma work with continous variables
4 months ago Gordon Smyth 52k
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1.6k
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Comment: Comment: LIMMA 2x2 Factorial Design with Paired Samples
4 months ago • updated 3 months ago Gordon Smyth 52k
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678
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Comment: Comment: how limma work with continous variables
4 months ago Gordon Smyth 52k
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668
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Comment: Comment: limma and Syntactically Invalid Factor Values
4 months ago Gordon Smyth 52k
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668
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Comment: Comment: limma and Syntactically Invalid Factor Values
4 months ago Gordon Smyth 52k
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1.6k
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Comment: Comment: LIMMA 2x2 Factorial Design with Paired Samples
4 months ago Gordon Smyth 52k
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1.6k
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Answer: Answer: LIMMA 2x2 Factorial Design with Paired Samples
4 months ago Gordon Smyth 52k
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331
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Answer: Answer: featureCounts from Rsubread
4 months ago Gordon Smyth 52k
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1.9k
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Answer: Answer: Inconsistent nullp and goseq enrichment results across operating systems
4 months ago Gordon Smyth 52k
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560
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Comment: Comment: DE analysis in EdgeR /Can any one please help me.
4 months ago Gordon Smyth 52k
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560
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Answer: Answer: DE analysis in EdgeR /Can any one please help me.
4 months ago Gordon Smyth 52k
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802
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Comment: Comment: Differences in Limma and Dreamlet random effects from confounded dataset
4 months ago Gordon Smyth 52k
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933
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Comment: Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
4 months ago Gordon Smyth 52k
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1.5k
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Comment: Comment: limma comparison for small sample size and how to get covariance matrix
4 months ago Gordon Smyth 52k
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1.5k
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Comment: Comment: limma comparison for small sample size and how to get covariance matrix
4 months ago Gordon Smyth 52k
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1
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1.5k
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Comment: Comment: limma comparison for small sample size and how to get covariance matrix
5 months ago Gordon Smyth 52k
0
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1
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933
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Answer: Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
5 months ago Gordon Smyth 52k
1
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1
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1.1k
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Comment: Comment: Using both voom and removeBatchEffect, will they double adjust the data or is it
5 months ago Gordon Smyth 52k
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1
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1.1k
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Answer: Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
5 months ago Gordon Smyth 52k
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0
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480
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Comment: Comment: Warning message when running limma with covariates
5 months ago Gordon Smyth 52k
2
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1
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480
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Answer: Answer: Warning message when running limma with covariates
5 months ago Gordon Smyth 52k
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2
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1.5k
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Answer: Answer: limma comparison for small sample size and how to get covariance matrix
5 months ago • updated 4 months ago Gordon Smyth 52k
1
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1
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702
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Answer: Answer: Can I adjust weights by group in dreamlet(), like in voomByGroup(), with a rando
5 months ago Gordon Smyth 52k
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1
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1.3k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 months ago Gordon Smyth 52k
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1
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1.3k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 months ago Gordon Smyth 52k
1
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1
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1.3k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 months ago Gordon Smyth 52k
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1.3k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 months ago Gordon Smyth 52k
0
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1
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1.3k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 months ago Gordon Smyth 52k
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0
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1.3k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 months ago Gordon Smyth 52k
0
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0
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475
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Answer: Answer: Ploting of normalized counts after batch removal
5 months ago Gordon Smyth 52k
1
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0
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456
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Answer: Answer: Subsetting RNAseq data | voomaByGroup()
6 months ago Gordon Smyth 52k
2
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1
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684
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Answer: Answer: How to correctly adjust for gender in edgeR
6 months ago Gordon Smyth 52k
1
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0
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625
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Comment: Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
6 months ago Gordon Smyth 52k
0
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1
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625
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Answer: Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
6 months ago Gordon Smyth 52k
1
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1
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596
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Answer: Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
6 months ago Gordon Smyth 52k
2
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0
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842
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Comment: Comment: Log-cpm values from limma
6 months ago Gordon Smyth 52k
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1
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1.0k
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Comment: Comment: Method to find pathways different between 2 groups
6 months ago Gordon Smyth 52k
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1
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1.0k
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Answer: Answer: Method to find pathways different between 2 groups
6 months ago Gordon Smyth 52k
0
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0
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830
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Comment: Comment: package goseq seems to be not available on the latest version of R
6 months ago Gordon Smyth 52k
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0
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761
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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
6 months ago Gordon Smyth 52k
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1
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830
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Answer: Answer: package goseq seems to be not available on the latest version of R
6 months ago Gordon Smyth 52k
5,184 results • Page 2 of 104
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