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Answer:
Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2
5 months ago
Gordon Smyth
53k
1
vote
1
reply
3.8k
views
Answer:
Answer: Is voomByGroup available in limma?
5 months ago
Gordon Smyth
53k
0
votes
1
reply
1.8k
views
Answer:
Answer: How to use goana function with zebrafish genome from org.Dr.eg.db
5 months ago
Gordon Smyth
53k
0
votes
1
reply
1.8k
views
Comment:
Comment: How to use goana function with zebrafish genome from org.Dr.eg.db
5 months ago
Gordon Smyth
53k
0
votes
0
replies
341
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
6 months ago
Gordon Smyth
53k
3
votes
1
reply
6.4k
views
Answer:
Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
6 months ago
Gordon Smyth
53k
1
vote
1
reply
2.7k
views
Comment:
Comment: Altered (negative or positive) logFC values for same gene from two intitial coun
6 months ago
Gordon Smyth
53k
1
vote
1
reply
2.7k
views
Answer:
Answer: Altered (negative or positive) logFC values for same gene from two intitial coun
6 months ago
Gordon Smyth
53k
0
votes
0
replies
1.5k
views
Comment:
Comment: Differential gene expression analysis on haplotype-resolved diploid assembly
6 months ago
Gordon Smyth
53k
2
votes
1
reply
1.5k
views
Answer:
Answer: Differential gene expression analysis on haplotype-resolved diploid assembly
6 months ago
Gordon Smyth
53k
0
votes
1
reply
3.3k
views
Comment:
Comment: parameters of filterByExpr
6 months ago
Gordon Smyth
53k
0
votes
0
replies
883
views
Answer:
Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi
6 months ago
Gordon Smyth
53k
0
votes
0
replies
485
views
Answer:
Answer: Typo in the help of lmFit()
6 months ago
Gordon Smyth
53k
0
votes
1
reply
669
views
Answer:
Answer: Limma suqeezeVar
6 months ago
Gordon Smyth
53k
0
votes
1
reply
1.3k
views
Answer:
Answer: Limma trend with limpa
6 months ago
Gordon Smyth
53k
1
vote
1
reply
3.3k
views
Comment:
Comment: Check removeBatchEffect effectiveness
6 months ago
Gordon Smyth
53k
1
vote
1
reply
5.1k
views
Comment:
Comment: limma::voom vs edgeR::voomLmFit - when to use?
6 months ago
Gordon Smyth
53k
0
votes
0
replies
5.8k
views
Comment:
Comment: How to load scRNA-seq data from GEO
7 months ago
Gordon Smyth
53k
1
vote
0
replies
5.8k
views
Comment:
Comment: How to load scRNA-seq data from GEO
7 months ago
Gordon Smyth
53k
0
votes
1
reply
3.4k
views
Comment:
Comment: limma correction for tumor purity
7 months ago
Gordon Smyth
53k
1
vote
1
reply
1.2k
views
Comment:
Comment: Dealing with heteroscedascity in limma
7 months ago
Gordon Smyth
53k
0
votes
1
reply
5.8k
views
Comment:
Comment: How to load scRNA-seq data from GEO
7 months ago
Gordon Smyth
53k
1
vote
3
replies
3.4k
views
Answer:
Answer: limma correction for tumor purity
7 months ago
Gordon Smyth
53k
1
vote
1
reply
1.2k
views
Answer:
Answer: Dealing with heteroscedascity in limma
7 months ago
Gordon Smyth
53k
0
votes
1
reply
3.3k
views
Comment:
Comment: Check removeBatchEffect effectiveness
7 months ago
Gordon Smyth
53k
0
votes
1
reply
5.8k
views
Answer:
Answer: How to load scRNA-seq data from GEO
7 months ago
Gordon Smyth
53k
0
votes
1
reply
3.3k
views
Comment:
Comment: parameters of filterByExpr
7 months ago
Gordon Smyth
53k
0
votes
1
reply
3.3k
views
Comment:
Comment: parameters of filterByExpr
7 months ago
Gordon Smyth
53k
3
votes
1
reply
3.3k
views
Answer:
Answer: parameters of filterByExpr
7 months ago
Gordon Smyth
53k
1
vote
1
reply
3.3k
views
Answer:
Answer: Check removeBatchEffect effectiveness
7 months ago
Gordon Smyth
53k
2
votes
0
replies
702
views
Answer:
Answer: ROAST for small sets
7 months ago
Gordon Smyth
53k
1
vote
0
replies
2.7k
views
Comment:
Comment: edgeR::cpm() results in negative values from raw counts of 0
7 months ago
Gordon Smyth
53k
2
votes
2
replies
2.7k
views
Answer:
Answer: edgeR::cpm() results in negative values from raw counts of 0
7 months ago
Gordon Smyth
53k
2
votes
1
reply
2.7k
views
Comment:
Comment: edgeR::cpm() results in negative values from raw counts of 0
7 months ago
Gordon Smyth
53k
2
votes
0
replies
1.9k
views
Answer:
Answer: how to use `arrayWeightsQuick()`?
8 months ago
Gordon Smyth
53k
0
votes
1
reply
1.9k
views
Comment:
Comment: how to use `arrayWeightsQuick()`?
8 months ago
Gordon Smyth
53k
0
votes
1
reply
992
views
Answer:
Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
8 months ago
Gordon Smyth
53k
2
votes
0
replies
1.5k
views
Answer:
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
8 months ago
Gordon Smyth
53k
1
vote
0
replies
1.2k
views
Comment:
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
8 months ago
Gordon Smyth
53k
3
votes
1
reply
1.2k
views
Answer:
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
8 months ago
Gordon Smyth
53k
0
votes
0
replies
448
views
Answer:
Answer: Is it possible to model DNA methylation as a dose response in edgeR?
9 months ago
Gordon Smyth
53k
1
vote
1
reply
1.5k
views
Comment:
Comment: Use of limma R package with targeted proteomics for DE analysis
9 months ago
Gordon Smyth
53k
0
votes
0
replies
691
views
Answer:
Answer: cameraPR() non directional test
9 months ago
Gordon Smyth
53k
1
vote
1
reply
1.5k
views
Answer:
Answer: Use of limma R package with targeted proteomics for DE analysis
9 months ago
Gordon Smyth
53k
0
votes
0
replies
962
views
Answer:
Answer: To count or not to count multi-overlapping reads?
9 months ago
Gordon Smyth
53k
1
vote
1
reply
915
views
Answer:
Answer: EdgeR Biological CVs
10 months ago
Gordon Smyth
53k
1
vote
0
replies
808
views
Answer:
Answer: Differential variability modelling with vst() expression
11 months ago
Gordon Smyth
53k
0
votes
1
reply
1.6k
views
Comment:
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
11 months ago
Gordon Smyth
53k
0
votes
1
reply
716
views
Answer:
Answer: Mean variance curve troubleshoot filtering
11 months ago
Gordon Smyth
53k
1
vote
1
reply
1.1k
views
Comment:
Comment: How do I fix an odd voom plot in a combined dataset?
11 months ago
Gordon Smyth
53k
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