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Comment: Comment: Differential enrichment analysis
10 weeks ago Gordon Smyth 50k
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540
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Comment: Comment: Constrast for Time Course Experiments using Limma
10 weeks ago Gordon Smyth 50k
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0
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779
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Comment: Comment: Strange logFC values in differential methylation site anslysis
10 weeks ago Gordon Smyth 50k
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1
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504
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Comment: Comment: Right way to pseudobulk donors across replicates in edgeR
10 weeks ago Gordon Smyth 50k
0
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1
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779
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Comment: Comment: Strange logFC values in differential methylation site anslysis
10 weeks ago Gordon Smyth 50k
0
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1
reply
779
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Comment: Comment: Strange logFC values in differential methylation site anslysis
10 weeks ago Gordon Smyth 50k
0
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0
replies
779
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Comment: Comment: Strange logFC values in differential methylation site anslysis
10 weeks ago Gordon Smyth 50k
0
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1
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322
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Comment: Comment: Interactions in batches of varying size with different number of replicates usin
11 weeks ago Gordon Smyth 50k
0
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1
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322
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Comment: Comment: Interactions in batches of varying size with different levels of replicates usin
11 weeks ago Gordon Smyth 50k
0
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2
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779
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Comment: Comment: Strange logFC values in differential methylation site anslysis
11 weeks ago Gordon Smyth 50k
1
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1
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525
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Comment: Comment: Library size normalization in methylation count analysis
11 weeks ago Gordon Smyth 50k
0
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1
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525
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Comment: Comment: Library size normalization in methylation count analysis
11 weeks ago Gordon Smyth 50k
0
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2
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589
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Comment: Comment: limma fo continous variables
12 weeks ago Gordon Smyth 50k
0
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1
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589
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Comment: Comment: limma fo continous variables
12 weeks ago Gordon Smyth 50k
0
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1
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438
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
12 weeks ago Gordon Smyth 50k
3
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1
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425
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Comment: Comment: Confusion about LFC using contrasts weights in EdgeR
3 months ago Gordon Smyth 50k
1
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1
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438
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
3 months ago Gordon Smyth 50k
0
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1
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678
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
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1
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678
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
0
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1
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678
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
0
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0
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384
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Comment: Comment: CAMERA + Gene Ontology Gene Sets
3 months ago Gordon Smyth 50k
0
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1
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393
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Comment: Comment: limma with interaction term
3 months ago Gordon Smyth 50k
0
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0
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640
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Comment: Comment: filtering lowly expressed reads
3 months ago Gordon Smyth 50k
0
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1
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365
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Comment: Comment: Nested paired design
3 months ago Gordon Smyth 50k
0
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0
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347
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Comment: Comment: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
1
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1
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440
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Comment: Comment: limma design model for categorical variable
3 months ago Gordon Smyth 50k
2
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0
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377
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Comment: Comment: voom with quality weights after RUV correction
3 months ago Gordon Smyth 50k
1
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0
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6.2k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
3 months ago Gordon Smyth 50k
1
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1
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460
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Comment: Comment: goseq, warning and strange plot from nullp
3 months ago Gordon Smyth 50k
0
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1
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471
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Comment: Comment: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
0
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0
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471
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Comment: Comment: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
1
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0
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600
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Comment: Comment: readDGE in edgeR giving me path names as sample names
3 months ago Gordon Smyth 50k
1
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1
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778
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Comment: Comment: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Gordon Smyth 50k
1
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1
reply
600
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Comment: Comment: readDGE in edgeR giving me path names as sample names
3 months ago Gordon Smyth 50k
1
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1
reply
3.8k
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Comment: Comment: Differential protein/biomarker expression using limma: is that possible?
3 months ago Gordon Smyth 50k
2
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1
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597
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Gordon Smyth 50k
0
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0
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597
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Gordon Smyth 50k
1
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1
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645
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Comment: Comment: Does EdgeR trimmed mean of M values (TMM) account for gene length?
3 months ago Gordon Smyth 50k
0
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0
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378
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Comment: Comment: EdgeR for methylation analysis when there is no replicates
3 months ago Gordon Smyth 50k
1
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0
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709
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Comment: Comment: EdgeR: Should I include all samples/conditions in my dispersion estimation while
3 months ago Gordon Smyth 50k
1
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1
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923
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Comment: Comment: limma-trend vs. limma-voom theoretical difference
4 months ago Gordon Smyth 50k
2
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1
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640
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Comment: Comment: filtering lowly expressed reads
4 months ago Gordon Smyth 50k
1
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1
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1.1k
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Comment: Comment: RNAseq paired-sample differantial expression analysis with many samples
4 months ago Gordon Smyth 50k
0
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0
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1.1k
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Comment: Comment: RNAseq paired-sample differantial expression analysis with many samples
4 months ago Gordon Smyth 50k
0
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0
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346
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Comment: Comment: Group comparison with one sample
4 months ago Gordon Smyth 50k
0
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0
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1.1k
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Comment: Comment: different number of DEG because of outliers
4 months ago Gordon Smyth 50k
3
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1
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1.1k
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Comment: Comment: RNAseq paired-sample differantial expression analysis with many samples
4 months ago Gordon Smyth 50k
0
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0
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544
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Comment: Comment: Different genes expression with limma
4 months ago Gordon Smyth 50k
0
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1
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641
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Comment: Comment: Help with model for differential expression analysis
4 months ago Gordon Smyth 50k
2
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1
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1.5k
views
Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
5 months ago Gordon Smyth 50k
1,724 results • Page 2 of 35
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