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Answer:
Answer: Subsetting RNAseq data | voomaByGroup()
11 hours ago • updated 57 minutes ago
Gordon Smyth
50k
1
vote
1
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122
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Answer:
Answer: How to correctly adjust for gender in edgeR
4 days ago • updated 3 days ago
Gordon Smyth
50k
1
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0
replies
246
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Comment:
Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
4 days ago
Gordon Smyth
50k
0
votes
1
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246
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Answer:
Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
5 days ago
Gordon Smyth
50k
1
vote
1
reply
271
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Answer:
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
9 days ago
Gordon Smyth
50k
2
votes
0
replies
311
views
Comment:
Comment: Log-cpm values from limma
9 days ago
Gordon Smyth
50k
1
vote
1
reply
327
views
Comment:
Comment: Method to find pathways different between 2 groups
11 days ago
Gordon Smyth
50k
1
vote
1
reply
327
views
Answer:
Answer: Method to find pathways different between 2 groups
13 days ago
Gordon Smyth
50k
0
votes
0
replies
272
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Comment:
Comment: package goseq seems to be not available on the latest version of R
13 days ago
Gordon Smyth
50k
0
votes
0
replies
405
views
Answer:
Answer: limma Intercept vs No-intercept models completely changing DMR results?
15 days ago
Gordon Smyth
50k
0
votes
1
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272
views
Answer:
Answer: package goseq seems to be not available on the latest version of R
15 days ago • updated 14 days ago
Gordon Smyth
50k
0
votes
0
replies
177
views
Answer:
Answer: NEED FOR NESSASORY HELP
16 days ago
Gordon Smyth
50k
0
votes
0
replies
158
views
Answer:
Answer: Gene-by-sample covariates in limma
16 days ago
Gordon Smyth
50k
3
votes
2
replies
627
views
Answer:
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
16 days ago
Gordon Smyth
50k
1
vote
1
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1.3k
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Comment:
Comment: Why p value inconsistent when using different number of pathway score?
19 days ago
Gordon Smyth
50k
1
vote
1
reply
216
views
Answer:
Answer: Improving the design matrices vignette in RNAseq123
23 days ago
Gordon Smyth
50k
1
vote
0
replies
204
views
Answer:
Answer: Citation for edgeR user guide
25 days ago
Gordon Smyth
50k
0
votes
1
reply
191
views
Answer:
Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
26 days ago
Gordon Smyth
50k
1
vote
1
reply
472
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Comment:
Comment: FilterByExpr low counts with small sample size
28 days ago
Gordon Smyth
50k
1
vote
1
reply
1.3k
views
Comment:
Comment: Why p value inconsistent when using different number of pathway score?
28 days ago
Gordon Smyth
50k
2
votes
1
reply
1.3k
views
Answer:
Answer: Why p value inconsistent when using different number of pathway score?
28 days ago
Gordon Smyth
50k
1
vote
0
replies
1.3k
views
Comment:
Comment: Why p value inconsistent when using different number of pathway score?
28 days ago
Gordon Smyth
50k
0
votes
1
reply
239
views
Answer:
Answer: RNAseq:Technical replicates from different batches
29 days ago
Gordon Smyth
50k
0
votes
0
replies
217
views
Comment:
Comment: Finding DEGs by using edgeR
4 weeks ago
Gordon Smyth
50k
3
votes
1
reply
472
views
Answer:
Answer: FilterByExpr low counts with small sample size
4 weeks ago
Gordon Smyth
50k
0
votes
1
reply
150
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Answer:
Answer: How to make DGEList and design matrix by edgeR package
4 weeks ago
Gordon Smyth
50k
0
votes
1
reply
217
views
Answer:
Answer: Finding DEGs by using edgeR
4 weeks ago
Gordon Smyth
50k
3
votes
1
reply
311
views
Answer:
Answer: Log-cpm values from limma
4 weeks ago
Gordon Smyth
50k
0
votes
1
reply
472
views
Comment:
Comment: FilterByExpr low counts with small sample size
4 weeks ago
Gordon Smyth
50k
0
votes
0
replies
1.3k
views
Comment:
Comment: Batch correction and repeated measures
4 weeks ago
Gordon Smyth
50k
0
votes
1
reply
364
views
Comment:
Comment: Methylation Analysis experiment design using Limma
4 weeks ago
Gordon Smyth
50k
0
votes
1
reply
364
views
Answer:
Answer: Methylation Analysis experiment design using Limma
4 weeks ago
Gordon Smyth
50k
1
vote
1
reply
976
views
Comment:
Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago
Gordon Smyth
50k
1
vote
1
reply
976
views
Comment:
Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago
Gordon Smyth
50k
1
vote
0
replies
208
views
Answer:
Answer: Differentially expressed genes in monocle pseudotime
4 weeks ago
Gordon Smyth
50k
0
votes
0
replies
368
views
Answer:
Answer: permutation test in edgeR
4 weeks ago • updated 28 days ago
Gordon Smyth
50k
0
votes
0
replies
369
views
Answer:
Answer: Why is my gene not significantly differentially expressed?
4 weeks ago
Gordon Smyth
50k
1
vote
2
replies
976
views
Comment:
Comment: Light difference when using coef vs omit a group when compare 3 groups.
5 weeks ago • updated 4 weeks ago
Gordon Smyth
50k
2
votes
1
reply
976
views
Answer:
Answer: Light difference when using coef vs omit a group when compare 3 groups.
5 weeks ago
Gordon Smyth
50k
0
votes
0
replies
187
views
Answer:
Answer: Limma design matrix only showing 3/4 treatments?
6 weeks ago
Gordon Smyth
50k
1
vote
1
reply
2.1k
views
Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago
Gordon Smyth
50k
1
vote
0
replies
2.1k
views
Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago
Gordon Smyth
50k
0
votes
0
replies
267
views
Comment:
Comment: Regressing out batch effects
6 weeks ago
Gordon Smyth
50k
1
vote
1
reply
2.1k
views
Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago
Gordon Smyth
50k
0
votes
0
replies
993
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
0
votes
1
reply
463
views
Comment:
Comment: Using a change in a continuous explanatory variable to test changes in gene expr
6 weeks ago
Gordon Smyth
50k
0
votes
1
reply
993
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
1
vote
1
reply
463
views
Answer:
Answer: Using a change in a continuous explanatory variable to test changes in gene expr
6 weeks ago
Gordon Smyth
50k
0
votes
1
reply
198
views
Answer:
Answer: edgeR analysis: glm functions and offset matrix
6 weeks ago
Gordon Smyth
50k
1
vote
0
replies
993
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
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