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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
9 weeks ago Sam ▴ 10
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Comment: Comment: Inconsistent results in DiffBind
5 months ago Sam ▴ 10
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Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
20 months ago Sam ▴ 10
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Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
20 months ago Sam ▴ 10
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Comment: Comment: Installing Bioconductor packages in Docker
21 months ago Sam ▴ 10
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
2.3 years ago Sam ▴ 10
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Comment: Comment: TOAST output
3.0 years ago Sam ▴ 10
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731
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Comment: Comment: TOAST output
3.0 years ago Sam ▴ 10
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Comment: Comment: DESeq2 unmix function
3.1 years ago Sam ▴ 10
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Comment: Comment: ChIPseeker: Annotating Peaks with both upstream and downstream gene
3.1 years ago Sam ▴ 10
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Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.1 years ago Sam ▴ 10
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Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.1 years ago Sam ▴ 10
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3.0k
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Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.1 years ago Sam ▴ 10
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4.7k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.1 years ago Sam ▴ 10
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2.0k
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Comment: Comment: DiffBind: dba.contrast for interaction terms
3.1 years ago Sam ▴ 10
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Comment: Comment: A mismatch between DiffBind's results and the same results retreieved as DESeq2
3.1 years ago Sam ▴ 10
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Comment: Comment: How sensitive is DiffBind to Deseq2 assumptions ?
3.2 years ago Sam ▴ 10
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1.7k
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Comment: Comment: How to add chr to an dba object before differential analysis to enable removing
3.2 years ago Sam ▴ 10
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Comment: Comment: Learning DiffBind - some basic questions
3.2 years ago Sam ▴ 10
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5.0k
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Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.2 years ago Sam ▴ 10
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Comment: Comment: An attempt to better understand DESeq2 dispersion estimation
3.2 years ago Sam ▴ 10
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4.7k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.2 years ago Sam ▴ 10
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4.7k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.2 years ago Sam ▴ 10
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4.7k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.2 years ago Sam ▴ 10
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1
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1.7k
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Comment: Comment: An attempt to better understand DESeq2 dispersion estimation
3.2 years ago Sam ▴ 10
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4.7k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.2 years ago Sam ▴ 10
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1.8k
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Comment: Comment: Learning DiffBind - some basic questions
3.2 years ago Sam ▴ 10
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5.0k
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Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.2 years ago Sam ▴ 10
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5.0k
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Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.2 years ago Sam ▴ 10
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1.2k
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Comment: Comment: Does DiffBind correctly designate peaks with very small fold-change to be statis
3.3 years ago Sam ▴ 10
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1.8k
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Comment: Comment: Learning DiffBind - some basic questions
3.4 years ago Sam ▴ 10
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4.7k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.4 years ago Sam ▴ 10
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4.7k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.4 years ago Sam ▴ 10
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1.8k
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Comment: Comment: Learning DiffBind - some basic questions
3.4 years ago Sam ▴ 10
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5.0k
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Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.6 years ago • updated 3.5 years ago Sam ▴ 10
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5.0k
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Comment: C: What is the correct use of removeBatchEffect's design parameter
3.6 years ago Sam ▴ 10
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5.0k
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Comment: C: What is the correct use of removeBatchEffect's design parameter
3.7 years ago Sam ▴ 10
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Comment: C: How to use removeBatchEffect for removing effect of multiple confounding variabl
3.7 years ago Sam ▴ 10
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5.0k
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Comment: C: What is the correct use of removeBatchEffect's design parameter
3.7 years ago Sam ▴ 10
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5.0k
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Comment: C: What is the correct use of removeBatchEffect's design parameter
3.7 years ago Sam ▴ 10
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1.0k
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Comment: C: How to compare a single RNA-Seq sample with microarray samples?
3.9 years ago Sam ▴ 10
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Comment: C: How to compare a single RNA-Seq sample with microarray samples?
3.9 years ago Sam ▴ 10
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17k
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Comment: C: standard error value (lfcSE) returned by DeSeq2
4.2 years ago Sam ▴ 10
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44k
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Comment: C: Batch correction in DESeq2
4.3 years ago Sam ▴ 10
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44k
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Comment: C: Batch correction in DESeq2
4.3 years ago Sam ▴ 10
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8.7k
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Comment: C: removeBatchEffect options: design and covariates
4.3 years ago Sam ▴ 10
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8.7k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago Sam ▴ 10
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