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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
20 months ago Sam ▴ 10
0
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2
replies
921
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Scores used for DiffBind's dba.plotHeatmap
DiffBind
21 months ago • updated 20 months ago Sam ▴ 10
0
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0
replies
783
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Comment: Comment: Inconsistent results in DiffBind
24 months ago Sam ▴ 10
0
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2
replies
943
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In DiffBind, dba.blacklist changes the minOverlap parameter
DiffBind
written 24 months ago by ▴ 10
1
vote
2
replies
783
views
Inconsistent results in DiffBind
DiffBind
24 months ago Sam ▴ 10
0
votes
0
replies
943
views
Answer: Answer: In DiffBind, dba.blacklist changes the minOverlap parameter
24 months ago Sam ▴ 10
0
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0
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3.0k
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Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
3.2 years ago Sam ▴ 10
0
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0
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3.0k
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Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
3.2 years ago Sam ▴ 10
0
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5
replies
3.0k
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
3.2 years ago Sam ▴ 10
0
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0
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7.7k
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Comment: Comment: Installing Bioconductor packages in Docker
3.3 years ago Sam ▴ 10
0
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0
replies
940
views
Creating a consensus peakset in DiffBind for all the conditions of an experiment
DiffBind
3.7 years ago Sam ▴ 10
0
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1
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6.7k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.9 years ago Sam ▴ 10
1
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2
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1.4k
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What lfcSE is dependent upon?
DESeq2
written 4.4 years ago by ▴ 10
2
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1
reply
1.0k
views
Why does samples order subtly influence the results of DESeq2?
DESeq2
updated 4.4 years ago by 43k • written 4.4 years ago by ▴ 10
0
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0
replies
1.1k
views
Comment: Comment: TOAST output
4.5 years ago Sam ▴ 10
0
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2
replies
1.1k
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TOAST output
TOAST
4.5 years ago Sam ▴ 10
0
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1
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1.1k
views
Comment: Comment: TOAST output
4.5 years ago Sam ▴ 10
0
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1
reply
1.3k
views
Comment: Comment: DESeq2 unmix function
4.6 years ago Sam ▴ 10
3
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3
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1.3k
views
DESeq2 unmix function
DESeq2
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 10
0
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0
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2.3k
views
Comment: Comment: ChIPseeker: Annotating Peaks with both upstream and downstream gene
4.6 years ago Sam ▴ 10
0
votes
0
replies
1.4k
views
What is the definition of flank_gene_distances output field in ChIPseeker
ChIPseeker
4.6 years ago Sam ▴ 10
0
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1
reply
4.9k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
4.7 years ago Sam ▴ 10
2
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3
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1.7k
views
DiffBind does not use DESeq2 MLE estimation of fold change
DiffBind
updated 2.4 years ago by ★ 5.2k • written 4.7 years ago by ▴ 10
0
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0
replies
4.9k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
4.7 years ago Sam ▴ 10
2
votes
2
replies
1.6k
views
A mismatch between DiffBind's results and the same results retreieved as DESeq2 (from DiffBind)
DiffBind
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by ▴ 10
0
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1
reply
4.9k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
4.7 years ago Sam ▴ 10
0
votes
1
reply
6.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
4.7 years ago Sam ▴ 10
0
votes
1
reply
3.1k
views
Comment: Comment: DiffBind: dba.contrast for interaction terms
4.7 years ago Sam ▴ 10
0
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0
replies
1.6k
views
Comment: Comment: A mismatch between DiffBind's results and the same results retreieved as DESeq2
4.7 years ago Sam ▴ 10
0
votes
1
reply
1.5k
views
Comment: Comment: How sensitive is DiffBind to Deseq2 assumptions ?
4.7 years ago Sam ▴ 10
0
votes
4
replies
1.5k
views
How sensitive is DiffBind to Deseq2 assumptions ?
DESeq2 DiffBind
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by ▴ 10
0
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1
reply
2.6k
views
Comment: Comment: How to add chr to an dba object before differential analysis to enable removing
4.7 years ago Sam ▴ 10
0
votes
0
replies
2.9k
views
Comment: Comment: Learning DiffBind - some basic questions
4.7 years ago Sam ▴ 10
0
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2
replies
7.5k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
4.7 years ago Sam ▴ 10
0
votes
0
replies
2.2k
views
Comment: Comment: An attempt to better understand DESeq2 dispersion estimation
4.7 years ago Sam ▴ 10
0
votes
1
reply
6.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
4.7 years ago Sam ▴ 10
0
votes
1
reply
6.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
4.7 years ago Sam ▴ 10
0
votes
1
reply
6.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
4.7 years ago Sam ▴ 10
0
votes
1
reply
2.2k
views
Comment: Comment: An attempt to better understand DESeq2 dispersion estimation
4.7 years ago Sam ▴ 10
0
votes
1
reply
6.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
4.7 years ago Sam ▴ 10
0
votes
2
replies
2.9k
views
Comment: Comment: Learning DiffBind - some basic questions
4.7 years ago Sam ▴ 10
1
vote
4
replies
2.2k
views
An attempt to better understand DESeq2 dispersion estimation
DESeq2
4.8 years ago • updated 4.7 years ago Sam ▴ 10
0
votes
0
replies
7.5k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
4.8 years ago Sam ▴ 10
0
votes
0
replies
7.5k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
4.8 years ago Sam ▴ 10
0
votes
0
replies
1.9k
views
Comment: Comment: Does DiffBind correctly designate peaks with very small fold-change to be statis
4.9 years ago Sam ▴ 10
0
votes
3
replies
1.9k
views
Does DiffBind correctly designate peaks with very small fold-change to be statistically significant?
DESeq2 DiffBind
updated 4.5 years ago by ★ 5.2k • written 4.9 years ago by ▴ 10
0
votes
1
reply
2.9k
views
Comment: Comment: Learning DiffBind - some basic questions
4.9 years ago Sam ▴ 10
1
vote
1
reply
1.0k
views
What is the correct interpretation of the p-value in GreyListChIP?
GreyListChIP
updated 4.9 years ago by ▴ 670 • written 4.9 years ago by ▴ 10
0
votes
1
reply
6.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
4.9 years ago Sam ▴ 10
0
votes
1
reply
6.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
4.9 years ago Sam ▴ 10
75 results • Page 1 of 2
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