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Comment: C: edgeR - multiple comparisions
13.5 years ago Mark Robinson ★ 1.1k
0
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2.0k
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Answer: A: edgeR - multiple comparisions
13.5 years ago Mark Robinson ★ 1.1k
0
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0
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983
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Answer: A: RNA-Seq/edgeR reproducability between lanes
13.5 years ago Mark Robinson ★ 1.1k
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1
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2.0k
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Comment: C: calcNormFactors - normalization
13.6 years ago Mark Robinson ★ 1.1k
0
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1
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2.0k
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Answer: A: calcNormFactors - normalization
13.6 years ago Mark Robinson ★ 1.1k
0
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0
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3.7k
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Answer: A: EdgeR GLM gene expression analysis of 3 groups
13.7 years ago Mark Robinson ★ 1.1k
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1
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1.4k
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Comment: C: edgeR
13.7 years ago Mark Robinson ★ 1.1k
0
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1
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2.6k
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Comment: C: edgeR - tagwise dispersion
13.7 years ago Mark Robinson ★ 1.1k
0
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1
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2.6k
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Answer: A: edgeR - tagwise dispersion
13.7 years ago Mark Robinson ★ 1.1k
0
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0
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1.3k
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Answer: A: edgeR: calcNormFactors
13.8 years ago Mark Robinson ★ 1.1k
0
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1
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970
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Answer: A: training data set for EdgeR
13.8 years ago Mark Robinson ★ 1.1k
0
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1
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1.9k
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Comment: C: Single nucleotide based RNAseq normalization with edgeR
13.8 years ago Mark Robinson ★ 1.1k
0
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1
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1.9k
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Comment: C: Single nucleotide based RNAseq normalization with edgeR
13.8 years ago Mark Robinson ★ 1.1k
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0
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1.2k
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Comment: C: edgeR - expressen between genes
13.8 years ago Mark Robinson ★ 1.1k
0
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0
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1.3k
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Answer: A: edgeR calcNormFactors NaN
13.8 years ago Mark Robinson ★ 1.1k
0
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1
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1.4k
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Answer: A: RNA-seq
13.8 years ago Mark Robinson ★ 1.1k
0
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0
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1.6k
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Answer: A: plotSmear() function in edgeR
13.8 years ago Mark Robinson ★ 1.1k
0
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0
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1.4k
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Answer: A: RNA-seq
13.8 years ago Mark Robinson ★ 1.1k
0
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2
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2.4k
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UCSC rtracklayer error "transfer closed with outstanding read data remaining"
updated 14.0 years ago by ★ 11k • written 14.0 years ago by ★ 1.1k
0
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0
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1.6k
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Answer: A: Writing table from DGEExact object (edgeR)
14.0 years ago Mark Robinson ★ 1.1k
0
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0
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1.9k
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Comment: C: edgeR and FDR values always equals 1
14.0 years ago Mark Robinson ★ 1.1k
0
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1
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1.1k
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Answer: A: Suggestions for Chip-seq differential expression analysis
14.0 years ago Mark Robinson ★ 1.1k
0
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0
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2.8k
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Answer: A: Outlier detection in DEseq
14.1 years ago Mark Robinson ★ 1.1k
0
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0
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976
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Answer: A: EdgeR questions in analyzing 454 data-about prior.n, TMM, and p_value
14.1 years ago Mark Robinson ★ 1.1k
0
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0
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2.4k
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Answer: A: edgeR maPlot - plotting group means?
14.2 years ago Mark Robinson ★ 1.1k
0
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0
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956
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Answer: A: A question on scaling normalization proposed by Mark Robinson Group
14.3 years ago Mark Robinson ★ 1.1k
0
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2
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3.2k
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Comment: C: edgeR normalization factors
14.4 years ago Mark Robinson ★ 1.1k
0
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0
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1.5k
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Comment: C: edgeR: a question about library size
14.4 years ago Mark Robinson ★ 1.1k
0
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1
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1.5k
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Answer: A: edgeR: a question about library size
14.4 years ago Mark Robinson ★ 1.1k
0
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1
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2.4k
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Answer: A: edgeR question tags per million
14.5 years ago Mark Robinson ★ 1.1k
0
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2
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3.6k
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Comment: C: DESeq and number of replicates required for RNA-Seq
14.5 years ago Mark Robinson ★ 1.1k
0
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0
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1.3k
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Answer: A: edgeR: common vs tagwise dispersion
14.6 years ago Mark Robinson ★ 1.1k
1
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0
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5.0k
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Answer: A: edgeR: pseudocounts, logConc and logFC
14.6 years ago Mark Robinson ★ 1.1k
0
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0
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2.2k
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Comment: C: Package/Function to calculate CpG density
15.1 years ago Mark Robinson ★ 1.1k
0
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4
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1.6k
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rtracklayer issue (getTable)
rtracklayer rtracklayer
updated 15.1 years ago by ▴ 620 • written 15.2 years ago by ★ 1.1k
0
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1
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1.6k
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Comment: C: rtracklayer issue (getTable)
15.1 years ago Mark Robinson ★ 1.1k
0
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1
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1.3k
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Answer: A: edgeR: deDGE Fisher exact p-values
15.3 years ago Mark Robinson ★ 1.1k
0
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1
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1.9k
views
hugene10st.db not available?
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ★ 1.1k
0
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2
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2.4k
views
pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 15.3 years ago by ★ 4.3k • written 15.3 years ago by ★ 1.1k
0
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1
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1.6k
views
pd.hugene.1.0.st.v1
oligo oligo
updated 15.3 years ago by 6.7k • written 15.3 years ago by ★ 1.1k
0
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0
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1.1k
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Comment: C: Fwd: edgeR with only 1 replicate?
15.3 years ago Mark Robinson ★ 1.1k
0
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0
replies
1.4k
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Comment: C: 2 color Nimblegen data and limma
15.4 years ago Mark Robinson ★ 1.1k
0
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1
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926
views
Answer: A: extracting character string
15.4 years ago Mark Robinson ★ 1.1k
0
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0
replies
1.2k
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Answer: A: Fwd: Presentation 19th June
15.5 years ago Mark Robinson ★ 1.1k
0
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1
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1.2k
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Fwd: Presentation 19th June
Bayesian convert Bayesian convert
15.5 years ago Mark Robinson ★ 1.1k
0
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1
reply
1.7k
views
GenomeGraphs/biomaRt/getBM on older genome builds
Mus musculus biomaRt GenomeGraphs Mus musculus biomaRt GenomeGraphs
updated 15.5 years ago by ▴ 600 • written 15.5 years ago by ★ 1.1k
0
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0
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836
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Answer: A: filtered Exon Arrays: Core vs Extended Dataset
15.6 years ago Mark Robinson ★ 1.1k
0
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0
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2.2k
views
Comment: C: expresso: performing RMA on NON-Affy data?
15.6 years ago Mark Robinson ★ 1.1k
0
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1
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2.1k
views
Answer: A: How to obtain a CDF file
15.6 years ago Mark Robinson ★ 1.1k
0
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2
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2.2k
views
Comment: C: expresso: performing RMA on NON-Affy data?
15.6 years ago Mark Robinson ★ 1.1k
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