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6
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2.3k
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Answer: A: Filtering after a contrast
9.3 years ago Steve Lianoglou ★ 13k
1
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0
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1.6k
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Answer: A: Appeal to DESeq2 authors: please keep results reproducible across version
9.3 years ago Steve Lianoglou ★ 13k
0
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0
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1.8k
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Answer: A: Should edgeR-GLM on single cell RNA data be performed on the counts or normalize
9.3 years ago Steve Lianoglou ★ 13k
0
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1
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2.2k
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Answer: A: I get nothing in my up and down regulated genes
9.3 years ago Steve Lianoglou ★ 13k
1
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1
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12k
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Comment: C: limma lmFit coefficients and p-values
9.3 years ago Steve Lianoglou ★ 13k
3
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1
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12k
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Answer: A: limma lmFit coefficients and p-values
9.3 years ago Steve Lianoglou ★ 13k
0
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0
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3.5k
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Comment: C: Unable to install Rcpp package for genefo
9.3 years ago Steve Lianoglou ★ 13k
0
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0
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1.3k
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Comment: C: Question on Gage
9.3 years ago Steve Lianoglou ★ 13k
0
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1
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2.7k
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Answer: A: Homo.sapiens select error
9.3 years ago Steve Lianoglou ★ 13k
1
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1
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1.8k
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Answer: A: DESeq2: Do basemean values take into account interaction effects?
9.3 years ago Steve Lianoglou ★ 13k
1
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0
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2.7k
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Answer: A: Why does the filtering of lowly expressed genes for analysis with edgeR must be
9.3 years ago Steve Lianoglou ★ 13k
0
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0
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3.2k
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Comment: C: DESEQ2 VST sample number limits?
9.3 years ago Steve Lianoglou ★ 13k
3
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1
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5.6k
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Answer: A: Filtering lowly expressed genes in voom-limma analysis
9.3 years ago Steve Lianoglou ★ 13k
0
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1
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2.9k
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Comment: C: DiffBind: dba.report reports odd FDR values
9.3 years ago Steve Lianoglou ★ 13k
0
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1
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2.9k
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Comment: C: DiffBind: dba.report reports odd FDR values
9.3 years ago Steve Lianoglou ★ 13k
3
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2
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7.7k
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Answer: A: edgeR subsetting DGEList by column/sample
9.3 years ago Steve Lianoglou ★ 13k
0
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1
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7.7k
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Comment: C: edgeR subsetting DGEList by column/sample
9.3 years ago Steve Lianoglou ★ 13k
3
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1
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1.9k
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Answer: A: Counting ambiguously mapped reads per feature
9.3 years ago Steve Lianoglou ★ 13k
0
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0
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1.4k
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Comment: C: DESeq outlier detection for unbalanced groups
9.3 years ago Steve Lianoglou ★ 13k
1
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0
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5.8k
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Comment: C: How to remove more than two batches in my data-sets
9.3 years ago Steve Lianoglou ★ 13k
0
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1
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5.8k
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Comment: C: How to remove more than two batches in my data-sets
updated 9.3 years ago by 53k • written 9.3 years ago by ★ 13k
1
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1
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5.8k
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Comment: C: How to remove more than two batches in my data-sets
9.3 years ago Steve Lianoglou ★ 13k
0
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0
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1.4k
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Comment: C: Filtering very low genes counts across all libraries
9.4 years ago Steve Lianoglou ★ 13k
0
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0
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1.8k
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Comment: C: How to submit limma patch
9.4 years ago Steve Lianoglou ★ 13k
1
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0
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3.1k
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Comment: C: edgeR- DE analysis with no replicates
9.4 years ago Steve Lianoglou ★ 13k
0
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0
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3.2k
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Comment: C: Getting rawdata for TMM normalization
9.4 years ago Steve Lianoglou ★ 13k
0
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0
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3.2k
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Answer: A: Getting rawdata for TMM normalization
9.4 years ago Steve Lianoglou ★ 13k
3
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2
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12k
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Answer: A: EdgeR glmLRT vs glmQLFTest
9.4 years ago Steve Lianoglou ★ 13k
0
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0
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2.7k
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Comment: C: DESeq2 with interest only for 1 gene
9.4 years ago Steve Lianoglou ★ 13k
3
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1
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3.1k
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Gene level exploratory data analysis from tximport results
tximport edgeR DESeq2
updated 9.4 years ago by 43k • written 9.4 years ago by ★ 13k
0
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1
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2.2k
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Answer: A: DESeq2 with paired data Heatmap
9.5 years ago Steve Lianoglou ★ 13k
1
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0
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2.0k
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Answer: A: RNAseq outlier is a critical sample
9.5 years ago Steve Lianoglou ★ 13k
0
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0
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1.2k
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Answer: A: ExpressionSet: Internal Standard
9.5 years ago Steve Lianoglou ★ 13k
0
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0
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2.4k
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Comment: C: Making package compatible with old version of R/Bioconductor
9.5 years ago Steve Lianoglou ★ 13k
0
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1
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2.4k
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Answer: A: Making package compatible with old version of R/Bioconductor
9.5 years ago Steve Lianoglou ★ 13k
0
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0
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1.7k
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Comment: C: design matrix - control for biological replicates
9.5 years ago Steve Lianoglou ★ 13k
0
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0
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1.9k
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Comment: C: ROAST using curated gene sets
9.5 years ago Steve Lianoglou ★ 13k
0
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0
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1.9k
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Answer: A: ROAST using curated gene sets
9.5 years ago Steve Lianoglou ★ 13k
0
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1
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2.3k
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Comment: C: limma paired design with continous covariate
9.5 years ago Steve Lianoglou ★ 13k
1
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1
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2.3k
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Answer: A: limma paired design with continous covariate
9.5 years ago Steve Lianoglou ★ 13k
2
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1
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11k
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Comment: C: Filtering of RNA-seq data in EdgeR
9.5 years ago Steve Lianoglou ★ 13k
0
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0
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2.0k
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Comment: C: limma overfitting model due to intercept and yet exclusion of intercept= uninter
9.5 years ago Steve Lianoglou ★ 13k
0
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0
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7.1k
views
Comment: C: PCA in DESeq2 - Can I get the genes contributing most to each component?
9.5 years ago Steve Lianoglou ★ 13k
0
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1
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7.1k
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Comment: C: PCA in DESeq2 - Can I get the genes contributing most to each component?
9.5 years ago Steve Lianoglou ★ 13k
0
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1
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2.3k
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Comment: C: pairwiseAlignments coordinate mapping?
9.5 years ago Steve Lianoglou ★ 13k
3
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3
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2.3k
views
pairwiseAlignments coordinate mapping?
biostrings pairwisealignment
updated 6 months ago by ▴ 20 • written 9.5 years ago by ★ 13k
1
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0
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2.5k
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Comment: C: Gviz: How to plot UTRs with GRanges object?
9.5 years ago Steve Lianoglou ★ 13k
1
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1
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2.5k
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Answer: A: Gviz: How to plot UTRs with GRanges object?
9.5 years ago Steve Lianoglou ★ 13k
2
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1
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4.1k
views
Answer: A: Can't make working link in roxygen2
9.5 years ago Steve Lianoglou ★ 13k
1
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0
replies
2.3k
views
Answer: A: CellMix compare results to CellCODE
9.5 years ago Steve Lianoglou ★ 13k
1,508 results • Page 6 of 31
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