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pairwisealignment
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1.2k
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Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
6.0 years ago
ktehmsen
• 0
0
votes
3
replies
1.5k
views
How to find multiple overlaps with pairwiseAlignment()?
biostrings
pairwisealignment
updated 6.5 years ago by
Hervé Pagès
16k • written 6.5 years ago by
kgorczak
▴ 10
0
votes
4
replies
1.5k
views
Query with Biostrings pairwise alignment output positon
biostrings
alignment
pairwisealignment
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
dhwani2410
• 0
1
vote
2
replies
3.6k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment
SNP
dnasequence
7.4 years ago
lordbleys
• 0
0
votes
0
replies
1.0k
views
Translate to aminoacid, align pairwise and un-translate back to DNA
translation
pairwisealignment
8.0 years ago
igferres
• 0
0
votes
1
reply
946
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 8.1 years ago by
Hervé Pagès
16k • written 8.1 years ago by
oliwindram
▴ 10
3
votes
2
replies
1.5k
views
pairwiseAlignments coordinate mapping?
biostrings
pairwisealignment
updated 8.2 years ago by
Hervé Pagès
16k • written 8.2 years ago by
Steve Lianoglou
★ 13k
2
votes
1
reply
1.1k
views
Error in score() function on pairwiseAlignment()
biostrings
pairwisealignment
updated 8.2 years ago by
shepherl
3.9k • written 8.2 years ago by
jdydu
• 0
0
votes
1
reply
1.3k
views
pairwiseAlignment() - Similarity NA% ?
biostrings
pairwisealignment
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
boris.steipe
• 0
2
votes
3
replies
1.2k
views
indels located at the edges of subject and Biostrings pairwiseAlignment function
pairwisealignment
biostrings
8.8 years ago
vincent.plagnol
▴ 10
0
votes
2
replies
1.7k
views
inconsistent pairwiseAlignment behaviour (Biostrings) with multiple alignments with identical scores
biostrings
pairwisealignment
8.9 years ago • updated 8.8 years ago
vincent.plagnol
▴ 10
4
votes
5
replies
2.8k
views
global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
Biostrings
pairwiseAlignment
updated 9.7 years ago by
Hervé Pagès
16k • written 9.7 years ago by
branislav misovic
▴ 120
12 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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