Biostar Pairwisealignment

Showing : pairwisealignment • reset

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637

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SAM samtools pairwisealignment alignment blastn

4.5 years ago ktehmsen • 0

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806

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biostrings pairwisealignment

updated 5.0 years ago by Hervé Pagès 16k • written 5.0 years ago by kgorczak ▴ 10

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726

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biostrings alignment pairwisealignment

updated 5.1 years ago by Hervé Pagès 16k • written 5.1 years ago by dhwani2410 • 0

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2.7k

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pairwisealignment SNP dnasequence

6.0 years ago lordbleys • 0

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672

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translation pairwisealignment

6.5 years ago igferres • 0

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610

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pairwisealignment indel

updated 6.6 years ago by Hervé Pagès 16k • written 6.6 years ago by oliwindram ▴ 10

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945

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biostrings pairwisealignment

updated 6.7 years ago by Hervé Pagès 16k • written 6.7 years ago by Steve Lianoglou 13k

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760

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biostrings pairwisealignment

updated 6.7 years ago by shepherl 3.4k • written 6.7 years ago by jdydu • 0

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964

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biostrings pairwisealignment

updated 7.3 years ago by Hervé Pagès 16k • written 7.3 years ago by boris.steipe • 0

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880

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pairwisealignment biostrings

7.3 years ago vincent.plagnol ▴ 10

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1.3k

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biostrings pairwisealignment

7.4 years ago vincent.plagnol ▴ 10

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2.0k

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Biostrings pairwiseAlignment

updated 8.2 years ago by Hervé Pagès 16k • written 8.2 years ago by branislav misovic ▴ 120

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Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE by Hervé Pagès 16k

See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932

Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE by Hervé Pagès 16k

See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932

Comment: Sva and batch effect by Gordon Smyth 47k

(+1). I find that ComBat tends to introduce spurious differential expression so, you think there's a batch effect affecting the variances a…

Comment: Advice for the analysis of microarray data with limma by Gordon Smyth 47k

You mean references on orthogonal polynomials? Polynomial approximation is a classic topic in mathematics and statistics and there are many…

Comment: Limma-voom with inverse probability weights (similar to sample weights) by Gordon Smyth 47k

The potential problem isn't with empirical Bayes with the fact that the variance estimate from your method A linear model might not be mean…

Votes

Answer: Sva and batch effect

Answer: AnnotationForge::makeOrgPackage "argument is missing, with no default" Errors

Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE

Answer: Limma-voom with inverse probability weights

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