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Comment: C: Limma, SAM and Fold Change Calculation
updated 7.1 years ago by 50k • written 16.8 years ago by ▴ 900
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2
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7.1k
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Comment: C: Limma, SAM and Fold Change Calculation
updated 7.1 years ago by 50k • written 16.8 years ago by ▴ 900
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0
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2.2k
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Answer: C: lmFit only deals with numerical values (data matrix object)?
updated 9.3 years ago by 50k • written 13.1 years ago by ▴ 900
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0
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2.1k
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Comment: C: Linkage Disequilibrium Analysis
11.8 years ago Holger Schwender ▴ 900
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0
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1.5k
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Comment: C: Siggenes SAM analysis: log2 transformation and Understanding output
12.2 years ago Holger Schwender ▴ 900
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1.2k
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Answer: A: siggenes parameters
12.8 years ago Holger Schwender ▴ 900
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0
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1.1k
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Answer: A: RMA (affy) followed by SAM (samr)
12.9 years ago Holger Schwender ▴ 900
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0
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1.3k
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Answer: A: siggenes sam2excel Error
13.1 years ago Holger Schwender ▴ 900
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1
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1.3k
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Answer: A: siggenes sam2excel Error
13.1 years ago Holger Schwender ▴ 900
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1
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1.2k
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Answer: A: prepare data matrix for siggenes
13.1 years ago Holger Schwender ▴ 900
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0
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1.0k
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Answer: A: SAM results
13.5 years ago Holger Schwender ▴ 900
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0
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867
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Answer: A: selection of dif.exp.genes defining FDR in SAM
13.9 years ago Holger Schwender ▴ 900
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0
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1.7k
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Answer: A: Interpreting the delta table from SAM
13.9 years ago Holger Schwender ▴ 900
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0
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1.2k
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Answer: A: Changes in siggenes?
14.3 years ago Holger Schwender ▴ 900
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0
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1.2k
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Comment: C: Patent issues of classification algorithms
14.4 years ago Holger Schwender ▴ 900
0
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0
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1.1k
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Answer: A: R: Minor problem with siggenes's command sam2excel when entrez=TRUE
14.7 years ago Holger Schwender ▴ 900
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0
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1.0k
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Answer: A: Minor problem with siggenes's command sam2excel when entrez=TRUE
14.8 years ago Holger Schwender ▴ 900
0
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0
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582
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Error message when working with sam
Annotation Annotation
14.8 years ago Holger Schwender ▴ 900
0
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0
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814
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Comment: C: P-values returned from siggenes's sam() function
15.0 years ago Holger Schwender ▴ 900
0
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2
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814
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P-values returned from siggenes's sam() function
updated 15.0 years ago by ▴ 320 • written 15.0 years ago by ▴ 900
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0
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702
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Comment: C: Error message when working with sam
15.1 years ago Holger Schwender ▴ 900
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0
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701
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Answer: A: Filtering SAM results
15.1 years ago Holger Schwender ▴ 900
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0
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982
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Answer: A: SNP analysis
15.2 years ago Holger Schwender ▴ 900
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1
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3.3k
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Comment: C: Heatmap problem
15.2 years ago Holger Schwender ▴ 900
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0
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1.1k
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Comment: C: Limma without eBayes correction
15.2 years ago Holger Schwender ▴ 900
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0
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1.2k
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Comment: C: Siggenes/SAM Error
15.8 years ago Holger Schwender ▴ 900
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1
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1.2k
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Comment: C: Siggenes/SAM Error
15.8 years ago Holger Schwender ▴ 900
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1
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1.2k
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Answer: A: Siggenes/SAM Error
15.8 years ago Holger Schwender ▴ 900
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0
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1.1k
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Comment: C: more samr woes
16.0 years ago Holger Schwender ▴ 900
0
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0
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2.3k
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Comment: C: SAM analysis : samr package vs siggenes package
16.0 years ago Holger Schwender ▴ 900
0
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1
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2.3k
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Answer: A: SAM analysis : samr package vs siggenes package
16.0 years ago Holger Schwender ▴ 900
0
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0
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1.5k
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Comment: C: SAM siggenes number of permutations
16.2 years ago Holger Schwender ▴ 900
0
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0
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1.5k
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Comment: C: SAM siggenes number of permutations
16.2 years ago Holger Schwender ▴ 900
0
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0
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1.5k
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Comment: C: SAM siggenes number of permutations
16.2 years ago Holger Schwender ▴ 900
0
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1
reply
1.5k
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Comment: C: SAM siggenes number of permutations
16.2 years ago Holger Schwender ▴ 900
0
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0
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1.1k
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Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
16.3 years ago Holger Schwender ▴ 900
0
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1
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676
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Answer: A: siggenes fc threshold
16.4 years ago Holger Schwender ▴ 900
0
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0
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456
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Answer: A: Question on SAM output
16.5 years ago Holger Schwender ▴ 900
0
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0
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362
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Answer: A: Problem of using MultiClass SAM (siggenes package)
16.5 years ago Holger Schwender ▴ 900
0
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0
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970
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Comment: C: design matrix
16.6 years ago Holger Schwender ▴ 900
0
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0
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747
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Answer: A: SAM vs. sam2.20
16.6 years ago Holger Schwender ▴ 900
0
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0
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691
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Getting associated genes from SNP anntotation files
SNP oligo SNP oligo
16.6 years ago Holger Schwender ▴ 900
0
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0
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363
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Answer: A: retrieving specific FDR value from SAM
16.8 years ago Holger Schwender ▴ 900
0
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1
reply
967
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Comment: C: sam and the new version
16.8 years ago Holger Schwender ▴ 900
0
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1
reply
967
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Comment: C: sam and the new version
16.8 years ago Holger Schwender ▴ 900
0
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2
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967
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Answer: A: sam and the new version
16.8 years ago Holger Schwender ▴ 900
0
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0
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1.7k
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Comment: C: how to see the content of a R function in a package?
16.9 years ago Holger Schwender ▴ 900
0
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0
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396
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Comment: C: siggenes 1.10 na.handling
16.9 years ago Holger Schwender ▴ 900
0
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0
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898
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Answer: A: problem with list.siggenes in siggenes package
16.9 years ago Holger Schwender ▴ 900
0
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0
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443
views
Answer: A: siggenes
17.2 years ago Holger Schwender ▴ 900
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