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Comment: C: Limma, SAM and Fold Change Calculation
updated 8.6 years ago by 53k • written 18.3 years ago by ▴ 900
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2
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7.8k
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Comment: C: Limma, SAM and Fold Change Calculation
updated 8.6 years ago by 53k • written 18.3 years ago by ▴ 900
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0
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2.9k
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Answer: C: lmFit only deals with numerical values (data matrix object)?
updated 10.9 years ago by 53k • written 14.6 years ago by ▴ 900
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0
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2.7k
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Comment: C: Linkage Disequilibrium Analysis
13.3 years ago Holger Schwender ▴ 900
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0
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1.9k
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Comment: C: Siggenes SAM analysis: log2 transformation and Understanding output
13.7 years ago Holger Schwender ▴ 900
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0
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1.5k
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Answer: A: siggenes parameters
14.4 years ago Holger Schwender ▴ 900
0
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0
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1.3k
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Answer: A: RMA (affy) followed by SAM (samr)
14.4 years ago Holger Schwender ▴ 900
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0
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1.6k
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Answer: A: siggenes sam2excel Error
14.6 years ago Holger Schwender ▴ 900
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1
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1.6k
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Answer: A: siggenes sam2excel Error
14.6 years ago Holger Schwender ▴ 900
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1
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1.5k
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Answer: A: prepare data matrix for siggenes
14.6 years ago Holger Schwender ▴ 900
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0
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1.3k
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Answer: A: SAM results
15.0 years ago Holger Schwender ▴ 900
0
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0
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1.1k
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Answer: A: selection of dif.exp.genes defining FDR in SAM
15.4 years ago Holger Schwender ▴ 900
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0
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2.1k
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Answer: A: Interpreting the delta table from SAM
15.4 years ago Holger Schwender ▴ 900
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0
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1.6k
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Answer: A: Changes in siggenes?
15.8 years ago Holger Schwender ▴ 900
0
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0
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1.6k
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Comment: C: Patent issues of classification algorithms
15.9 years ago Holger Schwender ▴ 900
0
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0
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1.4k
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Answer: A: R: Minor problem with siggenes's command sam2excel when entrez=TRUE
16.3 years ago Holger Schwender ▴ 900
0
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0
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1.3k
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Answer: A: Minor problem with siggenes's command sam2excel when entrez=TRUE
16.3 years ago Holger Schwender ▴ 900
0
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0
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737
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Error message when working with sam
Annotation Annotation
16.3 years ago Holger Schwender ▴ 900
0
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0
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1.1k
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Comment: C: P-values returned from siggenes's sam() function
16.5 years ago Holger Schwender ▴ 900
0
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2
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1.1k
views
P-values returned from siggenes's sam() function
updated 16.5 years ago by ▴ 320 • written 16.5 years ago by ▴ 900
0
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0
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949
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Comment: C: Error message when working with sam
16.6 years ago Holger Schwender ▴ 900
0
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0
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916
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Answer: A: Filtering SAM results
16.6 years ago Holger Schwender ▴ 900
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0
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1.2k
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Answer: A: SNP analysis
16.7 years ago Holger Schwender ▴ 900
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1
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4.3k
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Comment: C: Heatmap problem
16.8 years ago Holger Schwender ▴ 900
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0
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1.4k
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Comment: C: Limma without eBayes correction
16.8 years ago Holger Schwender ▴ 900
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0
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1.6k
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Comment: C: Siggenes/SAM Error
17.3 years ago Holger Schwender ▴ 900
0
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1
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1.6k
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Comment: C: Siggenes/SAM Error
17.4 years ago Holger Schwender ▴ 900
0
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1
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1.6k
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Answer: A: Siggenes/SAM Error
17.4 years ago Holger Schwender ▴ 900
0
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0
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1.4k
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Comment: C: more samr woes
17.5 years ago Holger Schwender ▴ 900
0
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0
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2.9k
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Comment: C: SAM analysis : samr package vs siggenes package
17.6 years ago Holger Schwender ▴ 900
0
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1
reply
2.9k
views
Answer: A: SAM analysis : samr package vs siggenes package
17.6 years ago Holger Schwender ▴ 900
0
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0
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2.2k
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Comment: C: SAM siggenes number of permutations
17.8 years ago Holger Schwender ▴ 900
0
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0
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2.2k
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Comment: C: SAM siggenes number of permutations
17.8 years ago Holger Schwender ▴ 900
0
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0
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2.2k
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Comment: C: SAM siggenes number of permutations
17.8 years ago Holger Schwender ▴ 900
0
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1
reply
2.2k
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Comment: C: SAM siggenes number of permutations
17.8 years ago Holger Schwender ▴ 900
0
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0
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1.4k
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Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
17.8 years ago Holger Schwender ▴ 900
0
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1
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934
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Answer: A: siggenes fc threshold
17.9 years ago Holger Schwender ▴ 900
0
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0
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647
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Answer: A: Question on SAM output
18.0 years ago Holger Schwender ▴ 900
0
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0
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511
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Answer: A: Problem of using MultiClass SAM (siggenes package)
18.0 years ago Holger Schwender ▴ 900
0
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0
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1.5k
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Comment: C: design matrix
18.1 years ago Holger Schwender ▴ 900
0
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0
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970
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Answer: A: SAM vs. sam2.20
18.2 years ago Holger Schwender ▴ 900
0
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0
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918
views
Getting associated genes from SNP anntotation files
SNP oligo SNP oligo
18.2 years ago Holger Schwender ▴ 900
0
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0
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555
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Answer: A: retrieving specific FDR value from SAM
18.3 years ago Holger Schwender ▴ 900
0
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1
reply
1.4k
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Comment: C: sam and the new version
18.3 years ago Holger Schwender ▴ 900
0
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1
reply
1.4k
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Comment: C: sam and the new version
18.3 years ago Holger Schwender ▴ 900
0
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2
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1.4k
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Answer: A: sam and the new version
18.3 years ago Holger Schwender ▴ 900
0
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0
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2.2k
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Comment: C: how to see the content of a R function in a package?
18.4 years ago Holger Schwender ▴ 900
0
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0
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698
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Comment: C: siggenes 1.10 na.handling
18.5 years ago Holger Schwender ▴ 900
0
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0
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1.1k
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Answer: A: problem with list.siggenes in siggenes package
18.5 years ago Holger Schwender ▴ 900
0
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0
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585
views
Answer: A: siggenes
18.8 years ago Holger Schwender ▴ 900
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