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Answer:
Answer: Pseudobulk running all groups together vs subsetting first
14 months ago
Wolfgang Huber
★ 13k
1
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1
reply
528
views
Answer:
Answer: DE Analysis on cells from a patient derived mouse xenograft with high levels of
14 months ago
Wolfgang Huber
★ 13k
0
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1
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579
views
Answer:
Answer: Question regarding averaging DESeq2 results.
20 months ago
Wolfgang Huber
★ 13k
0
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1
reply
3.8k
views
Answer:
Answer: Scaling for p.heatmap
22 months ago
Wolfgang Huber
★ 13k
1
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1
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2.0k
views
Answer:
Answer: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
2.3 years ago
Wolfgang Huber
★ 13k
0
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0
replies
712
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Answer:
Answer: Problem with ArrayQualityMetrics PCA plot
2.4 years ago
Wolfgang Huber
★ 13k
0
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0
replies
925
views
Answer:
Answer: cellHTS2 - normalization with BScore (performance
2.4 years ago
Wolfgang Huber
★ 13k
2
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0
replies
1.8k
views
Answer:
Answer: How to obtain summary statistics for all Bioc releases
2.8 years ago
Wolfgang Huber
★ 13k
1
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1
reply
1.9k
views
Answer:
Answer: DEXSeq: What's the best way to map an exon counting bin, e.g. E002 to exon(s) or
3.0 years ago
Wolfgang Huber
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1
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0
replies
1.0k
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Answer:
Answer: R Package for Statistical Analysis of High Throughput Screening (HTS) Data
3.2 years ago
Wolfgang Huber
★ 13k
0
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1
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1.0k
views
Answer:
Answer: Independent filtering of NGS data
3.2 years ago
Wolfgang Huber
★ 13k
0
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0
replies
1.1k
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Answer:
Answer: Error log when I use biomaRt getBM
3.2 years ago
Wolfgang Huber
★ 13k
3
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1
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1.7k
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Answer:
Answer: change all the negative value into positive value
3.4 years ago
Wolfgang Huber
★ 13k
0
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0
replies
1.1k
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Answer:
Answer: Normalisation of protein micro array data using VSN
3.5 years ago
Wolfgang Huber
★ 13k
1
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0
replies
25k
views
Answer:
A: lfcShrink doesn't work with contrasts
4.3 years ago
Wolfgang Huber
★ 13k
0
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0
replies
907
views
Answer:
A: IHW scale of problem
4.9 years ago
Wolfgang Huber
★ 13k
1
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0
replies
4.3k
views
Answer:
A: VOOM vs VSN vs log2 to transform proteome data before LIMMA analysis
5.2 years ago
Wolfgang Huber
★ 13k
0
votes
1
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1.5k
views
Answer:
A: stringasfactor = F changes the output of pheatmap, why?
5.2 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
848
views
Answer:
A: Array quality metrics for large sample size
5.2 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
752
views
Answer:
A: Extraction of connected components in an image
5.2 years ago
Wolfgang Huber
★ 13k
0
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1
reply
1.0k
views
Answer:
A: EBimage fftw issue
5.2 years ago
Wolfgang Huber
★ 13k
0
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0
replies
866
views
Answer:
A: DESeq2: plotMA looks wrong
5.3 years ago
Wolfgang Huber
★ 13k
2
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1
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7.7k
views
Answer:
A: DEseq2: Is vst/rlog transformation applied to raw counts or normalised counts?
5.3 years ago
Wolfgang Huber
★ 13k
0
votes
1
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1.2k
views
Answer:
A: Installing lpsymphony on Mac OS X
5.4 years ago
Wolfgang Huber
★ 13k
1
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1
reply
1.3k
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Answer:
A: IHW multiple testing correction
5.4 years ago
Wolfgang Huber
★ 13k
0
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1
reply
1.3k
views
Answer:
A: Initial List of Deprecated Package Bioc 3.9
5.5 years ago
Wolfgang Huber
★ 13k
1
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0
replies
978
views
Answer:
A: How to filter overlaping EBImage objects?
5.6 years ago
Wolfgang Huber
★ 13k
1
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0
replies
3.6k
views
Answer:
A: DESeq2- Size factors (median of ratios) assumptions - global adjustment normaliz
5.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.2k
views
Answer:
A: What are the different strategies to filter out low count genes?
5.8 years ago
Wolfgang Huber
★ 13k
3
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0
replies
1.3k
views
Answer:
C: Anomal pvalue distribution and qvalue calculation
5.9 years ago
Wolfgang Huber
★ 13k
2
votes
1
reply
1.3k
views
Answer:
A: Using DESeq2 normalisation method on a tximport list of matrices without sample
5.9 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.6k
views
Answer:
A: [DESeq2] Different results from tutorial
5.9 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.9k
views
Answer:
A: Robust transformation of raw RNA-seq counts for exploratory data analysis and hi
6.0 years ago
Wolfgang Huber
★ 13k
1
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0
replies
2.6k
views
Answer:
A: Limma - how to manage huge differences in library sizes
6.0 years ago
Wolfgang Huber
★ 13k
1
vote
1
reply
956
views
Answer:
A: How to Remove EBImage objects that have holes?
6.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.3k
views
Answer:
A: Is there a data package containing complex RNA-Seq data?
6.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
800
views
Answer:
A: Errors of loading HilbertVisGUI
6.2 years ago
Wolfgang Huber
★ 13k
2
votes
1
reply
2.9k
views
Answer:
A: Protein differential Expression analysis
6.3 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
711
views
Answer:
A: Multiple tests in a single deseq object
6.3 years ago
Wolfgang Huber
★ 13k
1
vote
0
replies
1.5k
views
Answer:
A: an unexplained phenomenon using variance stabilizing transformation for downstre
6.4 years ago
Wolfgang Huber
★ 13k
1
vote
0
replies
948
views
Answer:
A: DESeq possible when only rlog table available? (DESeq2 package)
6.4 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.1k
views
Answer:
A: How is the within-subject correlation modeled in time course experiments in DESe
6.4 years ago
Wolfgang Huber
★ 13k
1
vote
1
reply
3.0k
views
Answer:
A: Found more than one class
6.4 years ago
Wolfgang Huber
★ 13k
1
vote
1
reply
1.2k
views
Answer:
A: Running DESeq2 with gene-dependent binary variable such as membership in pathway
6.4 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
1.7k
views
Answer:
A: expression matrix with varianceStabilizingTransformation
6.5 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
2.8k
views
Answer:
A: function getAE from ArrayExpress needs update because EBI has switched to https
6.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
3.2k
views
Answer:
A: Different PCA plots using rlog and vsd on the same data set
6.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.3k
views
Answer:
A: phyloseq heatmap blank after multiple package updates
6.6 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.8k
views
Answer:
A: Error with DESeqDataSetFromMatrix is not available (for R version 3.4.1)
6.7 years ago
Wolfgang Huber
★ 13k
1
vote
2
replies
5.2k
views
Answer:
A: DESeq2: How to manually perform filtering and outlier detection?
6.7 years ago
Wolfgang Huber
★ 13k
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