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Answer: Answer: Pseudobulk running all groups together vs subsetting first
15 months ago Wolfgang Huber ★ 13k
1
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1
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562
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Answer: Answer: DE Analysis on cells from a patient derived mouse xenograft with high levels of
15 months ago Wolfgang Huber ★ 13k
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1
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586
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Answer: Answer: Question regarding averaging DESeq2 results.
21 months ago Wolfgang Huber ★ 13k
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1
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3.9k
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Answer: Answer: Scaling for p.heatmap
23 months ago Wolfgang Huber ★ 13k
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1
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2.0k
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Answer: Answer: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
2.4 years ago Wolfgang Huber ★ 13k
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729
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Answer: Answer: Problem with ArrayQualityMetrics PCA plot
2.5 years ago Wolfgang Huber ★ 13k
0
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940
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Answer: Answer: cellHTS2 - normalization with BScore (performance
2.5 years ago Wolfgang Huber ★ 13k
2
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1.8k
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Answer: Answer: How to obtain summary statistics for all Bioc releases
2.8 years ago Wolfgang Huber ★ 13k
1
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1
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1.9k
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Answer: Answer: DEXSeq: What's the best way to map an exon counting bin, e.g. E002 to exon(s) or
3.1 years ago Wolfgang Huber ★ 13k
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1.1k
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Answer: Answer: R Package for Statistical Analysis of High Throughput Screening (HTS) Data
3.2 years ago Wolfgang Huber ★ 13k
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1
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1.0k
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Answer: Answer: Independent filtering of NGS data
3.3 years ago Wolfgang Huber ★ 13k
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0
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1.1k
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Answer: Answer: Error log when I use biomaRt getBM
3.3 years ago Wolfgang Huber ★ 13k
3
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1.7k
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Answer: Answer: change all the negative value into positive value
3.4 years ago Wolfgang Huber ★ 13k
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1.1k
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Answer: Answer: Normalisation of protein micro array data using VSN
3.5 years ago Wolfgang Huber ★ 13k
1
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25k
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Answer: A: lfcShrink doesn't work with contrasts
4.3 years ago Wolfgang Huber ★ 13k
0
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0
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920
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Answer: A: IHW scale of problem
4.9 years ago Wolfgang Huber ★ 13k
1
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4.4k
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Answer: A: VOOM vs VSN vs log2 to transform proteome data before LIMMA analysis
5.2 years ago Wolfgang Huber ★ 13k
0
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1
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1.5k
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Answer: A: stringasfactor = F changes the output of pheatmap, why?
5.3 years ago Wolfgang Huber ★ 13k
0
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0
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866
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Answer: A: Array quality metrics for large sample size
5.3 years ago Wolfgang Huber ★ 13k
0
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0
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764
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Answer: A: Extraction of connected components in an image
5.3 years ago Wolfgang Huber ★ 13k
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1
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1.0k
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Answer: A: EBimage fftw issue
5.3 years ago Wolfgang Huber ★ 13k
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0
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881
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Answer: A: DESeq2: plotMA looks wrong
5.4 years ago Wolfgang Huber ★ 13k
2
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1
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7.8k
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Answer: A: DEseq2: Is vst/rlog transformation applied to raw counts or normalised counts?
5.4 years ago Wolfgang Huber ★ 13k
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1
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1.2k
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Answer: A: Installing lpsymphony on Mac OS X
5.5 years ago Wolfgang Huber ★ 13k
1
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1
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1.3k
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Answer: A: IHW multiple testing correction
5.5 years ago Wolfgang Huber ★ 13k
0
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1
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1.3k
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Answer: A: Initial List of Deprecated Package Bioc 3.9
5.5 years ago Wolfgang Huber ★ 13k
1
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1.0k
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Answer: A: How to filter overlaping EBImage objects?
5.7 years ago Wolfgang Huber ★ 13k
1
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0
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3.6k
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Answer: A: DESeq2- Size factors (median of ratios) assumptions - global adjustment normaliz
5.7 years ago Wolfgang Huber ★ 13k
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0
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2.2k
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Answer: A: What are the different strategies to filter out low count genes?
5.9 years ago Wolfgang Huber ★ 13k
3
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1.3k
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Answer: C: Anomal pvalue distribution and qvalue calculation
5.9 years ago Wolfgang Huber ★ 13k
2
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1
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1.3k
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Answer: A: Using DESeq2 normalisation method on a tximport list of matrices without sample
6.0 years ago Wolfgang Huber ★ 13k
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1
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1.6k
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Answer: A: [DESeq2] Different results from tutorial
6.0 years ago Wolfgang Huber ★ 13k
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0
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2.9k
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Answer: A: Robust transformation of raw RNA-seq counts for exploratory data analysis and hi
6.0 years ago Wolfgang Huber ★ 13k
1
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0
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2.7k
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Answer: A: Limma - how to manage huge differences in library sizes
6.0 years ago Wolfgang Huber ★ 13k
1
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1
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967
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Answer: A: How to Remove EBImage objects that have holes?
6.1 years ago Wolfgang Huber ★ 13k
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0
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1.3k
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Answer: A: Is there a data package containing complex RNA-Seq data?
6.2 years ago Wolfgang Huber ★ 13k
0
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0
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809
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Answer: A: Errors of loading HilbertVisGUI
6.3 years ago Wolfgang Huber ★ 13k
2
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1
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2.9k
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Answer: A: Protein differential Expression analysis
6.4 years ago Wolfgang Huber ★ 13k
0
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0
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725
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Answer: A: Multiple tests in a single deseq object
6.4 years ago Wolfgang Huber ★ 13k
1
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0
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1.5k
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Answer: A: an unexplained phenomenon using variance stabilizing transformation for downstre
6.4 years ago Wolfgang Huber ★ 13k
1
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0
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973
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Answer: A: DESeq possible when only rlog table available? (DESeq2 package)
6.4 years ago Wolfgang Huber ★ 13k
0
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1
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1.1k
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Answer: A: How is the within-subject correlation modeled in time course experiments in DESe
6.5 years ago Wolfgang Huber ★ 13k
1
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1
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3.0k
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Answer: A: Found more than one class
6.5 years ago Wolfgang Huber ★ 13k
1
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1
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1.2k
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Answer: A: Running DESeq2 with gene-dependent binary variable such as membership in pathway
6.5 years ago Wolfgang Huber ★ 13k
0
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2
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1.7k
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Answer: A: expression matrix with varianceStabilizingTransformation
6.6 years ago Wolfgang Huber ★ 13k
0
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1
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2.9k
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Answer: A: function getAE from ArrayExpress needs update because EBI has switched to https
6.6 years ago Wolfgang Huber ★ 13k
0
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0
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3.2k
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Answer: A: Different PCA plots using rlog and vsd on the same data set
6.6 years ago Wolfgang Huber ★ 13k
0
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0
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1.3k
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Answer: A: phyloseq heatmap blank after multiple package updates
6.7 years ago Wolfgang Huber ★ 13k
0
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1
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1.8k
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Answer: A: Error with DESeqDataSetFromMatrix is not available (for R version 3.4.1)
6.7 years ago Wolfgang Huber ★ 13k
1
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2
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5.2k
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Answer: A: DESeq2: How to manually perform filtering and outlier detection?
6.8 years ago Wolfgang Huber ★ 13k
825 results • Page 1 of 17
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