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Answer:
A: Error with DEXSeqDataSet object after performing pre-filter
8.3 years ago
Wolfgang Huber
★ 13k
1
vote
0
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2.1k
views
Answer:
A: Large differences in sample clustering using cummeRbund (csDendro) and rlog-dist
8.3 years ago
Wolfgang Huber
★ 13k
2
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0
replies
1.1k
views
Answer:
A: edger and deseq2 log2FC nornalization
8.4 years ago
Wolfgang Huber
★ 13k
1
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1
reply
2.3k
views
Answer:
A: arrayQualityMetrics error: Error: Unknown parameters: cex.axis
8.4 years ago
Wolfgang Huber
★ 13k
3
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1
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9.7k
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Answer:
A: Deseq2 error estimating size factors -- zeros in count matrix
updated 8.4 years ago by
Michael Love
42k • written 8.4 years ago by
Wolfgang Huber
★ 13k
0
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0
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6.6k
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Answer:
A: DESeq2 old versions
8.4 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
2.2k
views
Answer:
A: Suggestions for non-specific filtering criteria with limma
8.4 years ago
Wolfgang Huber
★ 13k
1
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0
replies
1.7k
views
Answer:
A: plotMA for unshrunken LFC in deseq2
8.4 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.4k
views
Answer:
A: rhdf5 H5Dget_create_plist implementation
8.5 years ago
Wolfgang Huber
★ 13k
1
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0
replies
1.3k
views
Answer:
A: arrayQualityMetrics for outlier detection
8.5 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
2.6k
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Answer:
A: DEXSeq and Independent filtering
8.5 years ago
Wolfgang Huber
★ 13k
0
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1
reply
2.5k
views
Answer:
A: fourCseq - error getZscores
8.5 years ago
Wolfgang Huber
★ 13k
0
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1
reply
3.0k
views
Answer:
A: error in vsn package
8.5 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.0k
views
Answer:
A: DESeq2 log2FoldChange of 48?
8.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.2k
views
Answer:
A: DEXSeq - Error in estimateSizeFactorsForMatrix(featureCounts(object)
8.6 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
1.6k
views
Answer:
A: normalization of a miRNA microarray
8.7 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
895
views
Answer:
A: Deseq2 independent filtering not relevant for my data?
8.7 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.5k
views
Answer:
A: how to use negative controls to obtain scale and offset parameters then to norma
8.7 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.5k
views
Answer:
A: how to use negative controls to obtain scale and offset parameters then to norma
8.7 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.5k
views
Answer:
A: how to use negative controls to obtain scale and offset parameters then to norma
8.7 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
893
views
Answer:
A: FourCSeq - Significant changes between condition without replicate
8.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
862
views
Answer:
A: FourCSeq - Significant Interaction
8.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
799
views
Answer:
A: FourCSeq - data(fc) ?
8.8 years ago
Wolfgang Huber
★ 13k
1
vote
1
reply
1.8k
views
Answer:
A: rounding issues using the VSN package
8.9 years ago
Wolfgang Huber
★ 13k
2
votes
1
reply
1.8k
views
Answer:
A: rounding issues using the VSN package
8.9 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.2k
views
Answer:
A: DEXSeq job parallelization and memory issue
9.0 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.4k
views
Answer:
A: fourCseq - zscore distribution - trans interractions
9.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.0k
views
Answer:
A: rhdf5 segfault on write of large matrix
9.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.9k
views
Answer:
A: DEXSeq output "Gene Model"
9.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
4.1k
views
Answer:
A: Problem with DESeq : \"Error in FUN(newX[, i], ...) : could not find function \"
9.1 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.6k
views
Answer:
A: Possible Data integration of molecular data(transcriptomic) and imaging data fro
9.2 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
3.4k
views
Answer:
A: Large disk images of DESeqDataSet / SummarizedExperiment objects when using the
9.3 years ago
Wolfgang Huber
★ 13k
1
vote
1
reply
2.3k
views
Answer:
A: summarizing shRNA data per gene with edgeR
9.3 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
1.7k
views
Answer:
A: DEXseq padj NA problem
9.3 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
4.5k
views
Answer:
A: arrayQualityMetrics with DESeq2
9.3 years ago
Wolfgang Huber
★ 13k
3
votes
0
replies
1.8k
views
Answer:
A: package specifically dedicated to a manuscript
9.3 years ago
Wolfgang Huber
★ 13k
2
votes
3
replies
3.8k
views
Answer:
A: arrayQualityMetrics: "All SVG style attribute must have length 1" and other erro
9.4 years ago
Wolfgang Huber
★ 13k
1
vote
2
replies
3.8k
views
Answer:
A: arrayQualityMetrics: "All SVG style attribute must have length 1" and other erro
9.4 years ago
Wolfgang Huber
★ 13k
1
vote
1
reply
7.3k
views
Answer:
A: DESeq2 rlog transformation
9.5 years ago
Wolfgang Huber
★ 13k
1
vote
1
reply
1.6k
views
Answer:
A: DEXSeq for DE of antisense transcription
9.5 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
6.5k
views
Answer:
A: DESeq2: combine replicates following rlog transformation for visualization, clus
9.5 years ago
Wolfgang Huber
★ 13k
1
vote
1
reply
6.5k
views
Answer:
A: DESeq2: combine replicates following rlog transformation for visualization, clus
9.5 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.3k
views
Answer:
A: fourCseq - getDifferences and normnalisation
9.5 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.7k
views
Answer:
A: SomaticSignatures, cannot reproduce use case
9.6 years ago
Wolfgang Huber
★ 13k
2
votes
0
replies
9.3k
views
Answer:
A: DESeq2 timecourse - How to set the experimental design
9.6 years ago
Wolfgang Huber
★ 13k
3
votes
1
reply
9.3k
views
Answer:
A: DESeq2 timecourse - How to set the experimental design
9.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
3.0k
views
Answer:
A: Interaction categorical/continuous variable DESeq2
9.7 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.2k
views
Answer:
A: Test Statistic in nbinomialTest in DESeq???
9.7 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
2.1k
views
Answer:
A: Tissue heterogeneity and TMM normalization
9.7 years ago
Wolfgang Huber
★ 13k
2
votes
1
reply
1.6k
views
Answer:
A: DEXSeq update results change
9.8 years ago
Wolfgang Huber
★ 13k
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