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0
votes
1
reply
3.1k
views
Answer:
A: assignChromosomeRegion in 2.6.0 ChIPpeakAnno
12.7 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
3.8k
views
build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus
biomaRt
ChIPpeakAnno
Mus musculus
biomaRt
ChIPpeakAnno
12.7 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.3k
views
Comment:
C: ChIPpeakAnno "examplePattern.fa" file
12.7 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.3k
views
Answer:
A: ChIPpeakAnno "examplePattern.fa" file
12.7 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
2.9k
views
Answer:
A: Finding closest gene to chromosomal position (non-human or mouse)
12.7 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
972
views
ChIPpeakAnno question--peak aggregation over bins from TSS
ChIPpeakAnno
ChIPpeakAnno
12.9 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.5k
views
Comment:
C: ChIPpeakAnno question--peak aggregation over bins from TSS
12.9 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.5k
views
Answer:
A: ChIPpeakAnno question--peak aggregation over bins from TSS
12.9 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.5k
views
Answer:
A: ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25,
12.9 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
2.5k
views
ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25, genome=Mmusculus)
12.9 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.5k
views
Comment:
C: ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25,
12.9 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
2.5k
views
Answer:
A: ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25,
12.9 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
2.3k
views
Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData
annotate
ChIPpeakAnno
AnnotationData
annotate
ChIPpeakAnno
13.0 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.3k
views
Answer:
A: Use ChIPpeakAnno to find two-sided nearest genes to a peak
13.0 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.3k
views
Answer:
A: Use ChIPpeakAnno to find two-sided nearest genes to a peak
13.0 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.1k
views
ChIPpeakAnno
Annotation
Category
ChIPpeakAnno
Annotation
Category
ChIPpeakAnno
13.0 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
765
views
GeneNetworkBuilder package
Network
Network
13.1 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.5k
views
ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics
GO
ChIPpeakAnno
Genetics
GO
ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
913
views
Comment:
C: Fetch scaffold sequences from BSgenome package
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
978
views
findOverlappingPeaks in ChipPeakAnno
annotate
annotate
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.9k
views
Comment:
C: Set plot title in makeVennDiagram (ChIPpeakAnno)
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
913
views
Fetch scaffold sequences from BSgenome package
BSgenome
BSgenome
BSgenome
BSgenome
updated 13.2 years ago by
Hervé Pagès
16k • written 13.2 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
1.9k
views
Comment:
C: Set plot title in makeVennDiagram (ChIPpeakAnno)
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.9k
views
Comment:
C: Set plot title in makeVennDiagram (ChIPpeakAnno)
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.9k
views
Answer:
A: Set plot title in makeVennDiagram (ChIPpeakAnno)
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.4k
views
question regarding ChIPPeakAnno use
Annotation
annotate
GLAD
ChIPpeakAnno
Annotation
annotate
GLAD
ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
829
views
ChIPpeakAnno - keep fold enrichment information
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.6k
views
Answer:
A: RE ChIPPEAKANNO
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
1.6k
views
RE ChIPPEAKANNO
miRNA
Genetics
ChIPpeakAnno
miRNA
Genetics
ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.3k
views
Answer:
A: ChipPeakAnno / GRanges isolate peaks that do NOT overlap
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
4
replies
1.6k
views
ChIPpeakAnno
convert
ChIPpeakAnno
convert
ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.6k
views
Answer:
A: ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.6k
views
Answer:
A: RE ChIPPEAKANNO
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.6k
views
Answer:
A: ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.5k
views
ChIPpeakAnno - getAnnotation
Alignment
Annotation
Alignment
Annotation
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.2k
views
ChIPpeakAnno - c elegans annotation feature type: translation start site
Transcription
Transcription
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.6k
views
Answer:
A: ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.6k
views
Answer:
A: ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.4k
views
Comment:
C: ChipPeakAnno: 4-way venn diagram
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
2.4k
views
Comment:
C: ChipPeakAnno: 4-way venn diagram
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
2.4k
views
Comment:
C: ChipPeakAnno: 4-way venn diagram
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
2.4k
views
Answer:
A: ChipPeakAnno: 4-way venn diagram
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.4k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.4k
views
Answer:
A: Question about ChIPpeakAnno R package
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.2k
views
ChIPpeakAnno to find peaks nearest to miRNA
miRNA
Annotation
GO
BSgenome
biomaRt
BSgenome
ChIPpeakAnno
miRNA
Annotation
GO
BSgenome
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
742
views
ChippeakAnno
updated 13.3 years ago by
Chuang Kee Ong
▴ 10 • written 13.3 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
1.6k
views
Answer:
A: more question about makeVennDiagram
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
4
replies
1.6k
views
more question about makeVennDiagram
GO
ChIPpeakAnno
GO
ChIPpeakAnno
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.6k
views
Comment:
C: more question about makeVennDiagram
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
2.2k
views
Answer:
A: ChIPpeakAnno to find peaks nearest to miRNA
13.3 years ago
Julie Zhu
★ 4.3k
660 results • Page
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