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984
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Masking of limma objects by beadarray when loading arrayQualityMetrics
updated 15.3 years ago by ▴ 50 • written 15.4 years ago by ▴ 680
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0
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1.5k
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Answer: A: arrayQualityMetrics - how do I use this with an MAList object???
15.7 years ago Marcus Davy ▴ 680
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0
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1.2k
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Comment: C: limma: cannot repoduce older analysis
15.8 years ago Marcus Davy ▴ 680
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0
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1.0k
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ArrayQuality package bug in agQuality function - marray package
Microarray arrayQuality Microarray arrayQuality
15.8 years ago Marcus Davy ▴ 680
0
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3
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1.9k
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topTable threshold on p-value and logFC [Re: was design matrix]
16.6 years ago Marcus Davy ▴ 680
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0
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1.9k
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Answer: A: topTable threshold on p-value and logFC [Re: was design matrix]
16.6 years ago Marcus Davy ▴ 680
0
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0
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1.9k
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Answer: A: topTable threshold on p-value and logFC [Re: was design matrix]
16.6 years ago Marcus Davy ▴ 680
0
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0
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2.3k
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Comment: C: how to revert to an older limma version?
16.8 years ago Marcus Davy ▴ 680
0
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2
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1.6k
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"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.1 years ago by 50k • written 17.1 years ago by ▴ 680
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3
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1.8k
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Error in RankProd package
limma RankProd limma RankProd
updated 17.1 years ago by ▴ 100 • written 17.1 years ago by ▴ 680
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0
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869
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Answer: A: Gene density plot with points underneath
17.2 years ago Marcus Davy ▴ 680
0
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0
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386
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Answer: A: limma, spot quality weight
17.5 years ago Marcus Davy ▴ 680
0
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1
reply
628
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Comment: C: limma
17.5 years ago Marcus Davy ▴ 680
0
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0
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589
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Answer: A: PC/Mac version-checking inside of R
17.7 years ago Marcus Davy ▴ 680
0
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0
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1.8k
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Comment: C: X11 problem
17.7 years ago Marcus Davy ▴ 680
0
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0
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1.3k
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Answer: A: maQualityPlots on Mac
17.7 years ago Marcus Davy ▴ 680
0
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0
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1.3k
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Answer: A: maQualityPlots on Mac
17.7 years ago Marcus Davy ▴ 680
0
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0
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1.1k
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Answer: A: readGenericHeader problem in limma 2.7.8?
17.7 years ago Marcus Davy ▴ 680
0
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0
replies
740
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Comment: C: How to create a MAList or ExprSet object from a matrix
17.7 years ago Marcus Davy ▴ 680
0
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0
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728
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Answer: A: exclude flagged spots in limma
17.8 years ago Marcus Davy ▴ 680
0
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1
reply
1.3k
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Comment: C: limma: read.maimages possibility to warn the user?
17.8 years ago Marcus Davy ▴ 680
0
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1
reply
1.1k
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Answer: A: Dist of exprSet object
17.8 years ago Marcus Davy ▴ 680
0
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0
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1.6k
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Comment: C: marray and gathering additional information from GenePix GPR file
17.8 years ago Marcus Davy ▴ 680
0
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2
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1.6k
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Comment: C: marray and gathering additional information from GenePix GPR file
17.8 years ago Marcus Davy ▴ 680
0
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0
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837
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Answer: A: default BG subtraction in plotMA...
18.0 years ago Marcus Davy ▴ 680
0
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0
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1.0k
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Answer: A: Targets file, array labels and Limma versions
18.4 years ago Marcus Davy ▴ 680
0
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0
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2.6k
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Answer: A: hexbin in R 2.2.0 - installation problem
18.6 years ago Marcus Davy ▴ 680
0
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1
reply
726
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Answer: A: problem normalizeMedians (limma)
18.6 years ago Marcus Davy ▴ 680
0
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0
replies
698
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Answer: A: ReadAffy(widget=TRUE) on OSX 10.4
18.7 years ago Marcus Davy ▴ 680
0
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1
reply
667
views
normalizing incomplete arrays [was: limma errormessage]
Normalization limma convert Normalization limma convert
updated 18.8 years ago by ▴ 890 • written 18.8 years ago by ▴ 680
0
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1
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977
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Answer: A: swaping values in a RGList object...
18.9 years ago Marcus Davy ▴ 680
0
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0
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1.5k
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Answer: A: Exact structure of RGList object (limma)
18.9 years ago Marcus Davy ▴ 680
0
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0
replies
744
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Answer: A: affy - pm() and mm() not returning affyids
19.0 years ago Marcus Davy ▴ 680
0
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0
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1.3k
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Answer: A: limma reading wrong column for GPR files
19.0 years ago Marcus Davy ▴ 680
0
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0
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2.3k
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Answer: A: alternate /tmp for Bioconductor install
19.0 years ago Marcus Davy ▴ 680
0
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0
replies
2.3k
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Answer: A: alternate /tmp for Bioconductor install
19.0 years ago Marcus Davy ▴ 680
0
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0
replies
937
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Answer: A: lmFit, weights and A
19.0 years ago Marcus Davy ▴ 680
0
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0
replies
735
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Answer: A: loading gal file using read.Galfile() in marray?
19.0 years ago Marcus Davy ▴ 680
0
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0
replies
639
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Answer: A: LIMMA ignoring background
19.0 years ago Marcus Davy ▴ 680
0
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0
replies
612
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Bug in marray, indexing single gene in maInd2Coord
19.0 years ago Marcus Davy ▴ 680
0
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2
replies
1.4k
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LIMMA : design (1, 2, 3, 3 ) , I gotEXCITINGresults, what could be the logic, since i h
Microarray GO affy limma EBarrays Microarray GO affy limma EBarrays
updated 19.0 years ago by ▴ 150 • written 19.0 years ago by ▴ 680
0
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3
replies
871
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affy_1.5.8-1.zip affy.pdf missing under Release 1.5
affy affy
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 680
0
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0
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871
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Answer: A: affy_1.5.8-1.zip affy.pdf missing under Release 1.5
19.1 years ago Marcus Davy ▴ 680
0
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0
replies
557
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[limma] How do I do to obtain DE genes in Time CourseExperiments?
Annotation limma Annotation limma
19.2 years ago Marcus Davy ▴ 680
0
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0
replies
1.0k
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Answer: A: normalizeQuantiles : log2 or not??
19.2 years ago Marcus Davy ▴ 680
0
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0
replies
1.9k
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Answer: A: LIMMA: How do I get the standard deviation?
19.3 years ago Marcus Davy ▴ 680
0
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1
reply
1.0k
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Answer: A: Using different processed data in limma package
19.4 years ago Marcus Davy ▴ 680
0
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1
reply
15k
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Answer: A: limma, FDR, and p.adjust
19.4 years ago Marcus Davy ▴ 680
0
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0
replies
912
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Answer: A: Having problem with the installation
19.4 years ago Marcus Davy ▴ 680
0
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0
replies
657
views
Bug in normalizeBetweenArrays, method="Rquantile"
Normalization Normalization
19.4 years ago Marcus Davy ▴ 680
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