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Answer: A: filtering
16.9 years ago Jenny Drnevich ★ 2.2k
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1.8k
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Comment: C: GEOquery on rawdata and processed data ?
16.9 years ago Jenny Drnevich ★ 2.2k
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1
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1.1k
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Answer: A: Affy normalization with custom chip.
17.0 years ago Jenny Drnevich ★ 2.2k
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1.9k
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Comment: C: problem with duplicateCorrelation and ExpressionSet objects
17.0 years ago Jenny Drnevich ★ 2.2k
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2
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1.9k
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Comment: C: problem with duplicateCorrelation and ExpressionSet objects
17.0 years ago Jenny Drnevich ★ 2.2k
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1.9k
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Comment: C: problem with duplicateCorrelation and ExpressionSet objects
17.0 years ago Jenny Drnevich ★ 2.2k
0
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1.9k
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problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ★ 2.2k
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1
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1.9k
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Comment: C: problem with duplicateCorrelation and ExpressionSet objects
17.0 years ago Jenny Drnevich ★ 2.2k
0
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1
reply
247
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problem with duplicateCorrelation and ExpressionSet objects
updated 17.0 years ago by 50k • written 17.0 years ago by ★ 2.2k
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2
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936
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Nimblegen data analysis
GO cdf affy oligo GO cdf affy oligo
updated 17.0 years ago by ▴ 140 • written 17.0 years ago by ★ 2.2k
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949
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Comment: C: workspace filename
17.0 years ago Jenny Drnevich ★ 2.2k
0
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2
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873
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dye effects stronger than dye-swaps?
Microarray Normalization Category Microarray Normalization Category
updated 17.1 years ago by ★ 6.0k • written 17.1 years ago by ★ 2.2k
0
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5
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1.3k
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dye effects stronger than dye-swaps?
Microarray Normalization Microarray Normalization
updated 17.1 years ago by ★ 6.0k • written 17.1 years ago by ★ 2.2k
0
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1
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1.3k
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Comment: C: dye effects stronger than dye-swaps?
17.1 years ago Jenny Drnevich ★ 2.2k
0
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3
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1.2k
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intended behavior of plotPCA and AffyBatch objects?
affy affycoretools affy affycoretools
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 2.2k
0
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1
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1.2k
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Comment: C: intended behavior of plotPCA and AffyBatch objects?
17.1 years ago Jenny Drnevich ★ 2.2k
0
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0
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786
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Comment: C: QC in simpleaffy
17.1 years ago Jenny Drnevich ★ 2.2k
0
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3
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1.8k
views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 2.2k
0
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1
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1.8k
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Comment: C: Can't get RCurl...
17.1 years ago Jenny Drnevich ★ 2.2k
0
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1
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2.9k
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Answer: A: Filtering by variance, IQR, etc.
17.1 years ago Jenny Drnevich ★ 2.2k
0
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1
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1.1k
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topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 17.2 years ago by 50k • written 17.2 years ago by ★ 2.2k
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1
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1.1k
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Comment: C: Nimblegen arrays/Limma package:duplicate correlation and other problems
17.2 years ago Jenny Drnevich ★ 2.2k
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0
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1.1k
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Comment: C: Nimblegen arrays/Limma package:duplicate correlation and other problems
17.2 years ago Jenny Drnevich ★ 2.2k
0
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2
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1.1k
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Comment: C: Nimblegen arrays/Limma package:duplicate correlation and other problems
17.2 years ago Jenny Drnevich ★ 2.2k
0
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1
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1.4k
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question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 17.2 years ago by 65k • written 17.2 years ago by ★ 2.2k
0
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1
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1.1k
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Answer: A: Nimblegen arrays/Limma package:duplicate correlation and other problems
17.2 years ago Jenny Drnevich ★ 2.2k
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0
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1.0k
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Affymetrix promoter arrays
Normalization oligo Normalization oligo
17.2 years ago Jenny Drnevich ★ 2.2k
0
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8
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1.6k
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oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 2.2k
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0
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1.6k
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Answer: A: oligo on R 2.4.1?
17.3 years ago Jenny Drnevich ★ 2.2k
0
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2
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1.6k
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Answer: A: oligo on R 2.4.1?
17.3 years ago Jenny Drnevich ★ 2.2k
0
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0
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670
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makePDpackage for tiling arrays
oligo oligo
17.3 years ago Jenny Drnevich ★ 2.2k
0
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0
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1.1k
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Comment: C: AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
17.3 years ago Jenny Drnevich ★ 2.2k
0
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0
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796
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Bioconductor Digest, Vol 47, Issue 29
limma limma
17.3 years ago Jenny Drnevich ★ 2.2k
0
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2
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1.7k
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suggestions for plotPCA / pca.legend
updated 17.3 years ago by 65k • written 17.3 years ago by ★ 2.2k
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0
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1.7k
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Comment: C: suggestions for plotPCA / pca.legend
17.3 years ago Jenny Drnevich ★ 2.2k
0
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0
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828
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questions on BioC's implementation of plier
Normalization plier Normalization plier
17.3 years ago Jenny Drnevich ★ 2.2k
0
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1
reply
1.3k
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Answer: A: continued dye effects, after normalization
17.3 years ago Jenny Drnevich ★ 2.2k
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5
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1.3k
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continued dye effects, after normalization
Normalization Normalization
17.4 years ago • updated 17.3 years ago Jenny Drnevich ★ 2.2k
0
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0
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612
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Answer: A: removing outlier/masked probes and gcrma
17.3 years ago Jenny Drnevich ★ 2.2k
0
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0
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404
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Answer: A: limma - reading data from different Print files in cDNA
17.4 years ago Jenny Drnevich ★ 2.2k
0
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0
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1.3k
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Comment: C: continued dye effects, after normalization
17.4 years ago Jenny Drnevich ★ 2.2k
0
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0
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553
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Answer: A: warnings....when treating duplicates
17.4 years ago Jenny Drnevich ★ 2.2k
0
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0
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1.3k
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Answer: A: simpleaffy and yeast2cdf problems
17.4 years ago Jenny Drnevich ★ 2.2k
0
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0
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553
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Answer: A: warnings....when treating duplicates
17.4 years ago Jenny Drnevich ★ 2.2k
0
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1
reply
1.5k
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Comment: C: Plate or print-order effects - limma
17.4 years ago Jenny Drnevich ★ 2.2k
0
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2
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1.5k
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Answer: A: Plate or print-order effects - limma
17.4 years ago Jenny Drnevich ★ 2.2k
0
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0
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438
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Answer: A: limma - MA
17.4 years ago Jenny Drnevich ★ 2.2k
0
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11
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2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
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0
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2.7k
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Comment: C: trouble hacking plotPCA
17.4 years ago Jenny Drnevich ★ 2.2k
0
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0
replies
1.2k
views
Comment: C: makecdfenv
17.4 years ago Jenny Drnevich ★ 2.2k
222 results • Page 2 of 5
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