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Answer: A: Steps of removing batch effects and hidden variables
9.7 years ago Lucia Peixoto ▴ 330
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1.8k
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Comment: C: No significant p-values
9.8 years ago Lucia Peixoto ▴ 330
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2
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1.8k
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Answer: A: No significant p-values
9.8 years ago Lucia Peixoto ▴ 330
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2
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1.4k
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About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 10.0 years ago by ★ 4.3k • written 10.0 years ago by ▴ 330
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2
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1.2k
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About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 10.1 years ago by ★ 4.3k • written 10.1 years ago by ▴ 330
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652
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About ChIPpeakAnno
updated 10.1 years ago by ★ 4.3k • written 10.1 years ago by ▴ 330
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3.9k
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Answer: A: DEseq for chip-seq data normalisation
10.5 years ago Lucia Peixoto ▴ 330
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1
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1.5k
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Comment: C: do we need remove PCR duplicate before we look for DE genes
10.9 years ago Lucia Peixoto ▴ 330
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3
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2.6k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
10.9 years ago Lucia Peixoto ▴ 330
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2
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2.6k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
10.9 years ago Lucia Peixoto ▴ 330
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1
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2.6k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
10.9 years ago Lucia Peixoto ▴ 330
0
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1
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2.6k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
10.9 years ago Lucia Peixoto ▴ 330
0
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17
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2.6k
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[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 10.9 years ago by ★ 13k • written 10.9 years ago by ▴ 330
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12k
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Comment: C: DESeq2 vs limma/voom: PCA completely different. How to proceed?
11.0 years ago Lucia Peixoto ▴ 330
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3
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3.8k
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DESeq estimateDispersions
Coverage DESeq Coverage DESeq
updated 11.0 years ago by ★ 3.7k • written 11.0 years ago by ▴ 330
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Comment: C: DESeq estimateDispersions
11.0 years ago Lucia Peixoto ▴ 330
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1
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4.4k
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EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ▴ 330
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2
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1.6k
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Difference between EdgeR and DeSeq in library normalization
RNASeq Normalization edgeR DESeq RNASeq Normalization edgeR DESeq
updated 11.1 years ago by ★ 3.7k • written 11.1 years ago by ▴ 330
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1
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9.9k
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Comment: C: edgeR: Value of variation of biological variation (BCV)
11.7 years ago Lucia Peixoto ▴ 330
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770
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edgeR, error in estimateCommonDisp
edgeR edgeR
11.7 years ago Lucia Peixoto ▴ 330
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3.7k
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Answer: A: samtools error
11.9 years ago Lucia Peixoto ▴ 330
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1.5k
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Comment: C: Chip-seq quality control
12.5 years ago Lucia Peixoto ▴ 330
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3
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1.5k
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Chip-seq quality control
Sequencing Sequencing
updated 12.6 years ago by ▴ 310 • written 12.6 years ago by ▴ 330
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1.2k
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Comment: C: [BioC} Multiple testing correction
13.3 years ago Lucia Peixoto ▴ 330
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3
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1.2k
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[BioC} Multiple testing correction
updated 13.3 years ago by 25k • written 13.3 years ago by ▴ 330
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1
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2.3k
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Comment: C: CDF file for Mouse Gene 1.1 ST Array
13.4 years ago Lucia Peixoto ▴ 330
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6
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2.3k
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CDF file for Mouse Gene 1.1 ST Array
cdf cdf
updated 13.4 years ago by ▴ 80 • written 13.4 years ago by ▴ 330
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1
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1.3k
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gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 13.6 years ago by ▴ 260 • written 13.6 years ago by ▴ 330
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2
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1.0k
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Advise on setting up a non-specific filter for differential expression
qPCR qPCR
13.7 years ago Lucia Peixoto ▴ 330
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1.0k
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Answer: A: Advise on setting up a non-specific filter for differential expression
13.7 years ago Lucia Peixoto ▴ 330
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0
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583
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Advise on setting up a non-specific filter for differential expression
13.7 years ago Lucia Peixoto ▴ 330
0
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1
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851
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dynamic range/scale using exprs (Biobase)
Biobase affy Biobase affy
updated 13.7 years ago by ★ 2.3k • written 13.7 years ago by ▴ 330
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