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Answer: A: Steps of removing batch effects and hidden variables
11.5 years ago Lucia Peixoto ▴ 330
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Comment: C: No significant p-values
11.6 years ago Lucia Peixoto ▴ 330
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2
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2.5k
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Answer: A: No significant p-values
11.6 years ago Lucia Peixoto ▴ 330
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2
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1.8k
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About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 11.8 years ago by ★ 4.3k • written 11.8 years ago by ▴ 330
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2
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1.5k
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About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 11.9 years ago by ★ 4.3k • written 11.9 years ago by ▴ 330
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880
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About ChIPpeakAnno
updated 11.9 years ago by ★ 4.3k • written 11.9 years ago by ▴ 330
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5.0k
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Answer: A: DEseq for chip-seq data normalisation
12.3 years ago Lucia Peixoto ▴ 330
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1
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1.9k
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Comment: C: do we need remove PCR duplicate before we look for DE genes
12.7 years ago Lucia Peixoto ▴ 330
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3
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3.9k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
12.7 years ago Lucia Peixoto ▴ 330
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2
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3.9k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
12.7 years ago Lucia Peixoto ▴ 330
0
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1
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3.9k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
12.7 years ago Lucia Peixoto ▴ 330
0
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1
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3.9k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
12.7 years ago Lucia Peixoto ▴ 330
0
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17
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3.9k
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[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ▴ 330
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13k
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Comment: C: DESeq2 vs limma/voom: PCA completely different. How to proceed?
12.8 years ago Lucia Peixoto ▴ 330
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3
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4.5k
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DESeq estimateDispersions
Coverage DESeq Coverage DESeq
updated 12.8 years ago by ★ 3.8k • written 12.8 years ago by ▴ 330
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Comment: C: DESeq estimateDispersions
12.8 years ago Lucia Peixoto ▴ 330
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1
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4.8k
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EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 330
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2
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1.8k
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Difference between EdgeR and DeSeq in library normalization
RNASeq Normalization edgeR DESeq RNASeq Normalization edgeR DESeq
updated 12.9 years ago by ★ 3.8k • written 12.9 years ago by ▴ 330
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1
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11k
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Comment: C: edgeR: Value of variation of biological variation (BCV)
13.5 years ago Lucia Peixoto ▴ 330
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0
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940
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edgeR, error in estimateCommonDisp
edgeR edgeR
13.5 years ago Lucia Peixoto ▴ 330
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4.4k
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Answer: A: samtools error
13.7 years ago Lucia Peixoto ▴ 330
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1.9k
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Comment: C: Chip-seq quality control
14.4 years ago Lucia Peixoto ▴ 330
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3
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1.9k
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Chip-seq quality control
Sequencing Sequencing
updated 14.4 years ago by ▴ 310 • written 14.4 years ago by ▴ 330
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1.7k
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Comment: C: [BioC} Multiple testing correction
15.1 years ago Lucia Peixoto ▴ 330
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3
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1.7k
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[BioC} Multiple testing correction
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 330
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2.9k
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Comment: C: CDF file for Mouse Gene 1.1 ST Array
15.2 years ago Lucia Peixoto ▴ 330
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6
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2.9k
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CDF file for Mouse Gene 1.1 ST Array
cdf cdf
updated 15.2 years ago by ▴ 80 • written 15.2 years ago by ▴ 330
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1
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1.7k
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gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 15.4 years ago by ▴ 260 • written 15.4 years ago by ▴ 330
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Answer: A: Advise on setting up a non-specific filter for differential expression
15.5 years ago Lucia Peixoto ▴ 330
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2
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1.4k
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Advise on setting up a non-specific filter for differential expression
qPCR qPCR
15.5 years ago Lucia Peixoto ▴ 330
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0
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815
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Advise on setting up a non-specific filter for differential expression
15.5 years ago Lucia Peixoto ▴ 330
0
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1
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1.2k
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dynamic range/scale using exprs (Biobase)
Biobase affy Biobase affy
updated 15.5 years ago by ★ 2.3k • written 15.5 years ago by ▴ 330
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