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Answer: A: Steps of removing batch effects and hidden variables
10.7 years ago Lucia Peixoto ▴ 330
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2.1k
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Comment: C: No significant p-values
10.8 years ago Lucia Peixoto ▴ 330
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2
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2.1k
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Answer: A: No significant p-values
10.8 years ago Lucia Peixoto ▴ 330
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2
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1.7k
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About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 11.0 years ago by ★ 4.3k • written 11.0 years ago by ▴ 330
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2
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1.3k
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About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 11.0 years ago by ★ 4.3k • written 11.0 years ago by ▴ 330
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782
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About ChIPpeakAnno
updated 11.1 years ago by ★ 4.3k • written 11.1 years ago by ▴ 330
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1
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4.5k
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Answer: A: DEseq for chip-seq data normalisation
11.4 years ago Lucia Peixoto ▴ 330
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1
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1.8k
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Comment: C: do we need remove PCR duplicate before we look for DE genes
11.8 years ago Lucia Peixoto ▴ 330
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3
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3.3k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.9 years ago Lucia Peixoto ▴ 330
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2
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3.3k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.9 years ago Lucia Peixoto ▴ 330
0
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1
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3.3k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.9 years ago Lucia Peixoto ▴ 330
0
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1
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3.3k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.9 years ago Lucia Peixoto ▴ 330
0
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17
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3.3k
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[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 330
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13k
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Comment: C: DESeq2 vs limma/voom: PCA completely different. How to proceed?
12.0 years ago Lucia Peixoto ▴ 330
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3
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4.2k
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DESeq estimateDispersions
Coverage DESeq Coverage DESeq
updated 12.0 years ago by ★ 3.8k • written 12.0 years ago by ▴ 330
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4.2k
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Comment: C: DESeq estimateDispersions
12.0 years ago Lucia Peixoto ▴ 330
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1
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4.6k
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EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 12.0 years ago by ★ 13k • written 12.0 years ago by ▴ 330
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2
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1.7k
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Difference between EdgeR and DeSeq in library normalization
RNASeq Normalization edgeR DESeq RNASeq Normalization edgeR DESeq
updated 12.1 years ago by ★ 3.8k • written 12.1 years ago by ▴ 330
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1
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11k
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Comment: C: edgeR: Value of variation of biological variation (BCV)
12.6 years ago Lucia Peixoto ▴ 330
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0
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869
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edgeR, error in estimateCommonDisp
edgeR edgeR
12.7 years ago Lucia Peixoto ▴ 330
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0
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4.1k
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Answer: A: samtools error
12.8 years ago Lucia Peixoto ▴ 330
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1.7k
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Comment: C: Chip-seq quality control
13.5 years ago Lucia Peixoto ▴ 330
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3
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1.7k
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Chip-seq quality control
Sequencing Sequencing
updated 13.5 years ago by ▴ 310 • written 13.5 years ago by ▴ 330
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1.4k
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Comment: C: [BioC} Multiple testing correction
14.2 years ago Lucia Peixoto ▴ 330
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3
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1.4k
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[BioC} Multiple testing correction
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 330
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1
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2.6k
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Comment: C: CDF file for Mouse Gene 1.1 ST Array
14.3 years ago Lucia Peixoto ▴ 330
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6
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2.6k
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CDF file for Mouse Gene 1.1 ST Array
cdf cdf
updated 14.3 years ago by ▴ 80 • written 14.3 years ago by ▴ 330
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1
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1.5k
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gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 14.6 years ago by ▴ 260 • written 14.6 years ago by ▴ 330
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1.2k
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Answer: A: Advise on setting up a non-specific filter for differential expression
14.6 years ago Lucia Peixoto ▴ 330
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2
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1.2k
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Advise on setting up a non-specific filter for differential expression
qPCR qPCR
14.6 years ago Lucia Peixoto ▴ 330
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0
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715
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Advise on setting up a non-specific filter for differential expression
14.6 years ago Lucia Peixoto ▴ 330
0
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1
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1.0k
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dynamic range/scale using exprs (Biobase)
Biobase affy Biobase affy
updated 14.7 years ago by ★ 2.3k • written 14.7 years ago by ▴ 330
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