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Answer: Answer: ATACseqQC shiftGAlignmentsList() problem
5 months ago Ou, Jianhong ★ 1.3k
0
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1
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457
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Answer: Answer: ATACseqTFEA - preparebindingSites() for whole genome?
5 months ago Ou, Jianhong ★ 1.3k
2
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2
replies
1.7k
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Answer: Answer: How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
13 months ago Ou, Jianhong ★ 1.3k
1
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0
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611
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Answer: Answer: Interpretation of $vennCounts output "Others"
16 months ago Ou, Jianhong ★ 1.3k
2
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1
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848
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Answer: Answer: motifStack Plotting the correct data positions on x axis
2.2 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.1k
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Answer: Answer: Error in .order_seqlevels(chrom_sizes[, "chrom"])
2.5 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.2k
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Answer: Answer: trackViewer peak visualization
2.6 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.8k
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Answer: Answer: trackViewer bigWig smoothing
2.6 years ago Ou, Jianhong ★ 1.3k
0
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1
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978
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Answer: Answer: trackViewer font
2.6 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.0k
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Answer: Answer: ribosomeProfilingQC - countReads function - is it possible to consider library
3.2 years ago Ou, Jianhong ★ 1.3k
0
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1
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775
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Answer: Answer: trackViewer: File format detection
3.4 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.9k
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Answer: A: ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
3.7 years ago Ou, Jianhong ★ 1.3k
1
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0
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9.3k
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Answer: A: Interpreting TSS Enrichment Score Summary
3.7 years ago Ou, Jianhong ★ 1.3k
1
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0
replies
460
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Answer: C: Virus found in GeneNetworkBuilder_1.28.1.tar.gz
4.3 years ago Ou, Jianhong ★ 1.3k
0
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0
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639
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Answer: A: Can I use trackViewer to generate methylation lolliops with my own gene models a
4.5 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.0k
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Answer: A: Error in running ATACseqQC
4.6 years ago Ou, Jianhong ★ 1.3k
1
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2
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1.6k
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Answer: A: trackViewer, the interactive version, can't view negative values in bigWig
4.8 years ago Ou, Jianhong ★ 1.3k
0
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2
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1.9k
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Answer: A: atacseqQC error while splittin the bamfile
5.0 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.2k
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Answer: A: chippeakanno file reading error
5.1 years ago Ou, Jianhong ★ 1.3k
1
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0
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670
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Answer: A: how can I convert a sequence to number
5.1 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.5k
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Answer: A: The meaning of results produced by the bamQC function implemented in the ATACseq
5.2 years ago Ou, Jianhong ★ 1.3k
1
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0
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1.4k
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Answer: A: Methylation data visualization using methyAnalysis with minfi
5.4 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.6k
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Answer: A: ChIPpeakAnno overlap peaks with TSS returns more than TSS overlap
5.6 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.0k
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Answer: A: Compare the DNA footprinting between different samples when using ATACseqQC
5.8 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.5k
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Answer: A: use factorFootprints function in ATACseqQC to get DNA footprinting for certain g
5.8 years ago Ou, Jianhong ★ 1.3k
0
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0
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913
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Answer: A: ATACseqQC questions in R language
5.9 years ago Ou, Jianhong ★ 1.3k
1
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0
replies
967
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Answer: A: Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
6.0 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.7k
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Answer: A: Issue installing packages ATACseqQC and GO.db
6.1 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.1k
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Answer: A: motifStack importMatrix problem reading meme file to pcm
6.2 years ago Ou, Jianhong ★ 1.3k
0
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0
replies
1.4k
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Answer: A: integer overflow in ChIPpeakAnno assignChromosomeRegion
6.2 years ago Ou, Jianhong ★ 1.3k
1
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0
replies
946
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Answer: A: Custom regions in assignChromosomeRegion?
6.3 years ago Ou, Jianhong ★ 1.3k
2
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1
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864
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Answer: A: motifStack: how to make the start of motif logos have the same distance to the c
6.3 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.1k
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Answer: A: Identification of Overrepresented Transcription Factor Binding Motifs in the Pro
6.4 years ago Ou, Jianhong ★ 1.3k
0
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0
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968
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Answer: A: Attempts to create a lolliplot from 1000 genomes .popvcf file using trackViewer
6.4 years ago Ou, Jianhong ★ 1.3k
0
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0
replies
1.1k
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Answer: A: ATACseqQC needs too much memory
6.4 years ago Ou, Jianhong ★ 1.3k
1
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0
replies
1.5k
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Answer: A: ChIPpeakAnno binOverGene error
6.4 years ago Ou, Jianhong ★ 1.3k
1
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1
reply
9.9k
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Answer: A: How to change seqlevels in a GRanges object
6.9 years ago Ou, Jianhong ★ 1.3k
3
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1
reply
1.3k
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Answer: A: Annotation Database for ChIPpeakAnno
6.9 years ago Ou, Jianhong ★ 1.3k
0
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0
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985
views
Answer: A: trackviewer lolliplot pie.stack
6.9 years ago Ou, Jianhong ★ 1.3k
1
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0
replies
3.8k
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Answer: A: mm10 phastCons data for use with ATACseqQC
7.0 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.3k
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Answer: A: RNAseq read coverage plot: What tool?
7.1 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.5k
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Answer: A: ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is d
7.1 years ago Ou, Jianhong ★ 1.3k
2
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1
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3.3k
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Answer: A: ChIPpeakAnno, MACS format annotation
7.1 years ago Ou, Jianhong ★ 1.3k
1
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0
replies
1.6k
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Answer: A: ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
7.4 years ago Ou, Jianhong ★ 1.3k
1
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0
replies
1.6k
views
Answer: A: ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
7.4 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
2.9k
views
Answer: A: ChIPpeakAnno-problem exporting data due to "arguments imply differing number of
7.4 years ago Ou, Jianhong ★ 1.3k
3
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0
replies
1.6k
views
Answer: A: How to fix ChIPPeakAnno error in adding gene names to annotated peaks?
7.4 years ago Ou, Jianhong ★ 1.3k
0
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0
replies
2.5k
views
Answer: A: problem to load data into ChIPpeakAnno
7.5 years ago Ou, Jianhong ★ 1.3k
0
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0
replies
1.9k
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Answer: A: Convert HOMER motif matrix to pfm?
7.7 years ago Ou, Jianhong ★ 1.3k
0
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0
replies
1.6k
views
Answer: A: Plotting protein position weighted matrices in seqLogo and DiffLogo
7.8 years ago Ou, Jianhong ★ 1.3k
86 results • Page 1 of 2
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