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0
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6
replies
1.5k
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a program to force fastq using pred+33 scoring system
updated 10.0 years ago by 25k • written 10.0 years ago by ★ 2.0k
0
votes
0
replies
973
views
how to change pred+33 to pred+44 in shortread
10.0 years ago wang peter ★ 2.0k
0
votes
3
replies
1.0k
views
a possible bug in the shortread packge
updated 10.0 years ago by 25k • written 10.0 years ago by ★ 2.0k
0
votes
4
replies
1.8k
views
failed to install biocondoctuor
updated 10.4 years ago by ★ 8.2k • written 10.4 years ago by ★ 2.0k
0
votes
4
replies
1.1k
views
the
updated 10.5 years ago by 25k • written 10.5 years ago by ★ 2.0k
0
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0
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827
views
how to filter downloading SRA data
10.5 years ago wang peter ★ 2.0k
2
votes
2
replies
3.4k
views
how to get cel file by getGEO
updated 10.6 years ago by ▴ 40 • written 10.6 years ago by ★ 2.0k
0
votes
1
reply
2.3k
views
how to calculate logFC in limma
updated 10.6 years ago by ▴ 80 • written 10.7 years ago by ★ 2.0k
0
votes
3
replies
2.7k
views
how to convert ExpressionSet to AffyBatch
convert convert
updated 10.7 years ago by 65k • written 10.7 years ago by ★ 2.0k
0
votes
2
replies
1.0k
views
how to do the time series analysis?
Clustering Clustering
updated 10.7 years ago by ▴ 10 • written 10.7 years ago by ★ 2.0k
0
votes
0
replies
493
views
a question about chip normalization
10.9 years ago wang peter ★ 2.0k
0
votes
3
replies
1.6k
views
do we need remove PCR duplicate before we look for DE genes
updated 10.9 years ago by ★ 3.7k • written 10.9 years ago by ★ 2.0k
0
votes
1
reply
1.4k
views
error to load the library affycoretools
updated 10.9 years ago by 21k • written 10.9 years ago by ★ 2.0k
0
votes
0
replies
662
views
does contamination bother the normalization in transcriptome analysis
10.9 years ago wang peter ★ 2.0k
0
votes
0
replies
552
views
how to deal with antisense gene in DESeq or edgeR?
11.0 years ago wang peter ★ 2.0k
0
votes
3
replies
1.2k
views
an error in AnnotationForge
updated 11.0 years ago by 65k • written 11.0 years ago by ★ 2.0k
0
votes
1
reply
853
views
how to get the CEL files of CLL package
updated 11.1 years ago by 25k • written 11.1 years ago by ★ 2.0k
0
votes
3
replies
985
views
beyond gene differential expression
11.1 years ago wang peter ★ 2.0k
0
votes
0
replies
2.5k
views
subscript out of bounds in makeAnnDbPkg function
Annotation Annotation
11.1 years ago wang peter ★ 2.0k
0
votes
4
replies
989
views
what is the difference between AssayTechnologies and AssayDomains
11.1 years ago wang peter ★ 2.0k
0
votes
0
replies
1.1k
views
how to use color to represent significant changed genes in maPlot of edgeR
ASSIGN ASSIGN
11.1 years ago wang peter ★ 2.0k
0
votes
12
replies
1.6k
views
how to understand the concept metadata in bioconductor
updated 11.3 years ago by ★ 13k • written 11.3 years ago by ★ 2.0k
0
votes
2
replies
630
views
shortread error?
updated 11.3 years ago by 25k • written 11.3 years ago by ★ 2.0k
0
votes
5
replies
1.5k
views
difference results by needle program and pairwiseAlignment
updated 11.4 years ago by 16k • written 11.4 years ago by ★ 2.0k
0
votes
2
replies
810
views
a problem of trimLRPatterns still confused me
updated 11.4 years ago by ▴ 590 • written 11.4 years ago by ★ 2.0k
0
votes
2
replies
599
views
report a possble bug in shortread
updated 11.4 years ago by 25k • written 11.4 years ago by ★ 2.0k
0
votes
3
replies
845
views
any package can be used to extract SNP from bam or pileup file
updated 11.4 years ago by 25k • written 11.4 years ago by ★ 2.0k
0
votes
0
replies
574
views
deseq vs. edger? a good paper
11.5 years ago wang peter ★ 2.0k
0
votes
4
replies
955
views
how to get the quality score system information from the reads
ShortRead ShortRead
updated 11.5 years ago by 25k • written 11.5 years ago by ★ 2.0k
0
votes
1
reply
712
views
a question about the low level match function
PROcess PROcess
updated 11.5 years ago by ▴ 590 • written 11.5 years ago by ★ 2.0k
0
votes
3
replies
686
views
how to get the first hit in each sequence from vmatchPattern results
updated 11.5 years ago by 16k • written 11.5 years ago by ★ 2.0k
1
vote
4
replies
2.4k
views
questions about matchPattern and vmatchPattern
11.5 years ago wang peter ★ 2.0k
0
votes
5
replies
983
views
a question about trimLRPatterns?
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ★ 2.0k
0
votes
0
replies
736
views
any package can be used to do statistics of blast results
11.5 years ago wang peter ★ 2.0k
0
votes
5
replies
737
views
shan
DESeq DESeq
updated 11.6 years ago by ★ 13k • written 11.6 years ago by ★ 2.0k
0
votes
2
replies
1.2k
views
which R package can be used to do all the GO analysis
Annotation GO Annotation GO
updated 11.6 years ago by ▴ 750 • written 11.6 years ago by ★ 2.0k
0
votes
1
reply
1.6k
views
how to adjust p-value in edgeR
updated 11.6 years ago by 65k • written 11.6 years ago by ★ 2.0k
0
votes
0
replies
608
views
how to find DE genes using both of 51bp data and 100bp data
11.6 years ago wang peter ★ 2.0k
0
votes
1
reply
1.1k
views
how does ShortRead function identify score system
cycle cycle
updated 11.6 years ago by 25k • written 11.6 years ago by ★ 2.0k
0
votes
0
replies
862
views
a problem with DESeq
11.6 years ago wang peter ★ 2.0k
0
votes
1
reply
1.1k
views
an error when i installed the DESeq
updated 11.6 years ago by ★ 13k • written 11.6 years ago by ★ 2.0k
0
votes
2
replies
947
views
what difference to use edgeR in two different mode?
updated 11.6 years ago by ★ 1.5k • written 11.6 years ago by ★ 2.0k
0
votes
0
replies
829
views
an error to load edgeR
11.6 years ago wang peter ★ 2.0k
0
votes
0
replies
694
views
find DE by edgeR
11.7 years ago wang peter ★ 2.0k
0
votes
1
reply
1.5k
views
report a potential bug in edgeR
updated 11.7 years ago by 50k • written 11.7 years ago by ★ 2.0k
0
votes
1
reply
632
views
urgent help: meet an error in using edgeR
updated 11.7 years ago by 25k • written 11.7 years ago by ★ 2.0k
0
votes
11
replies
4.6k
views
how to make makeContrast in edgeR?
updated 11.7 years ago by 21k • written 11.7 years ago by ★ 2.0k
0
votes
0
replies
658
views
about the model.matrix function?
11.7 years ago wang peter ★ 2.0k
0
votes
3
replies
513
views
how to check the parameters of the function ShortRead:::.freqSequences?
updated 11.7 years ago by 25k • written 11.7 years ago by ★ 2.0k
0
votes
1
reply
831
views
how to plot quality report
ShortRead ShortRead
updated 11.7 years ago by 25k • written 11.7 years ago by ★ 2.0k
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