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Answer:
Answer: GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
2.5 years ago
Sean Davis
21k
1
vote
0
replies
1.1k
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Answer:
Answer: How to obtain clinical data from TCGA via Bioconductor GenomicDataCommons
2.5 years ago
Sean Davis
21k
1
vote
1
reply
1.3k
views
Answer:
Answer: 2 questions: why there is nothing for file_ids? How could I generate a manifest
2.8 years ago
Sean Davis
21k
0
votes
0
replies
1.5k
views
Answer:
Answer: unable to find an inherited method for function ‘Table’ for signature ‘"GSE"
2.8 years ago
Sean Davis
21k
1
vote
0
replies
1.3k
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Answer:
Answer: when using getGEO() from GEOquery, an error happened : a file does not exist
3.3 years ago
Sean Davis
21k
4
votes
1
reply
1.4k
views
Answer:
A: GEOquery: preprocessing log of imported data
3.9 years ago
Sean Davis
21k
0
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0
replies
886
views
Answer:
A: Annotation Using GEOquery
4.5 years ago
Sean Davis
21k
1
vote
0
replies
1.3k
views
Answer:
A: Downloading a private GEO with GEOquery
4.6 years ago
Sean Davis
21k
1
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0
replies
1.3k
views
Answer:
A: TCGA MAF (Mutations) data
5.0 years ago
Sean Davis
21k
2
votes
1
reply
1.2k
views
Answer:
A: GenomicDataCommons request timeouts when cases() %>% ... %>% results_all()
5.3 years ago
Sean Davis
21k
2
votes
3
replies
1.6k
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Answer:
A: Using GenomicDataCommons R package to identify cases with both DNA methylation a
5.6 years ago
Sean Davis
21k
1
vote
1
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2.6k
views
Answer:
A: Using eset while parsing GSE file located in a path
5.7 years ago
Sean Davis
21k
1
vote
1
reply
2.4k
views
Answer:
A: Filtering Gene Symbols and Sample Description from GSE files of GEO
5.7 years ago
Sean Davis
21k
1
vote
1
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1.4k
views
Answer:
A: Unable to connect to 'watson.nci.nih.gov' on port 80 using GEOmetadb R library
5.9 years ago
Sean Davis
21k
0
votes
0
replies
1.5k
views
Answer:
A: GEOquery using keywords in R
6.0 years ago
Sean Davis
21k
4
votes
1
reply
3.2k
views
Answer:
A: How to check the read length for all the TCGA data samples in GDC?
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
Sean Davis
21k
0
votes
0
replies
2.0k
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Answer:
A: Need help loading gene expression data into R using either ArrayExpress or GEOqu
6.1 years ago
Sean Davis
21k
2
votes
0
replies
3.2k
views
Answer:
C: getGEO error when trying to download a series matrix file
6.2 years ago
Sean Davis
21k
1
vote
1
reply
1.3k
views
Answer:
A: GEO2R Gene Expression
6.2 years ago
Sean Davis
21k
0
votes
0
replies
1.3k
views
Answer:
A: GEOquery: Diagnosing SOFT file error
6.2 years ago
Sean Davis
21k
1
vote
0
replies
1.4k
views
Answer:
A: getGEO Error: Duplicate identifiers for rows
6.2 years ago
Sean Davis
21k
2
votes
1
reply
4.7k
views
Answer:
A: Are two biological replicates enough for a transcriptome analysis using DESeq2?
6.3 years ago
Sean Davis
21k
1
vote
2
replies
4.0k
views
Answer:
A: GEOquery http:// url error
6.3 years ago
Sean Davis
21k
0
votes
0
replies
1.6k
views
Answer:
A: GEOquery getGEO 404
6.3 years ago
Sean Davis
21k
2
votes
0
replies
1.3k
views
Answer:
A: How to check if the microarray data is from codelink
6.4 years ago
Sean Davis
21k
4
votes
1
reply
2.5k
views
Answer:
A: SummarizedExperiment object from GEOquery obtained GSE
6.4 years ago
Sean Davis
21k
0
votes
0
replies
1.8k
views
Answer:
A: Intron length per transcript using GenomicFeatures
6.5 years ago
Sean Davis
21k
0
votes
1
reply
1.2k
views
Answer:
C: Where is the "RNAseq2 level 3" data
6.5 years ago
Sean Davis
21k
0
votes
0
replies
1.4k
views
Answer:
A: How do I know which peak to analyze?
6.5 years ago
Sean Davis
21k
1
vote
1
reply
645
views
Answer:
A: Normalizing an entire dataset
6.5 years ago
Sean Davis
21k
0
votes
0
replies
2.0k
views
Answer:
C: Cannot retrieve projects from TCGA using getGDCprojects function
6.5 years ago
Sean Davis
21k
0
votes
0
replies
1.3k
views
Answer:
A: how to obtain differentially expressed genes from a GSE serie
6.5 years ago
Sean Davis
21k
3
votes
1
reply
2.0k
views
Answer:
A: Cannot download GEOmetadb sqlite file
6.5 years ago
Sean Davis
21k
1
vote
1
reply
1.5k
views
Answer:
A: How to construct an up-to-date and annotation-rich RangeSummarizedExperiment obj
6.5 years ago
Sean Davis
21k
2
votes
1
reply
3.0k
views
Answer:
A: Comparing one condition to multiple others using DESeq2 contrasts
6.5 years ago
Sean Davis
21k
0
votes
0
replies
971
views
Answer:
A: Subsetting samples and columns of a MethyLumiSet subsets QC probes
6.6 years ago
Sean Davis
21k
1
vote
0
replies
1.3k
views
Answer:
A: Changing R package dependencies
6.6 years ago
Sean Davis
21k
1
vote
1
reply
4.1k
views
Answer:
A: Retrieving data from NCBI GEO Problem and RNA-Seq Data Analysis
6.7 years ago
Sean Davis
21k
1
vote
1
reply
1.6k
views
Answer:
A: Problem with GEOquery R package in Windows when trying to download specific GEO
7.1 years ago
Sean Davis
21k
0
votes
0
replies
1.1k
views
Answer:
A: Error in "getGSEDataTables" in GSEquery package
7.4 years ago
Sean Davis
21k
1
vote
0
replies
1.2k
views
Answer:
A: Reading files from Softlayer Object Storage
7.5 years ago
Sean Davis
21k
0
votes
1
reply
2.1k
views
Answer:
A: GEOquery error in downloading SOFT files
7.5 years ago
Sean Davis
21k
3
votes
0
replies
3.9k
views
Answer:
A: GEOquery Fails to Download Series Matrix File
7.5 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
Answer:
A: SRAdb "outdated" sqlite db
7.7 years ago
Sean Davis
21k
0
votes
0
replies
2.3k
views
Answer:
A: GEO error : Warning message: In read.table(file = file, header = header, sep = s
7.7 years ago
Sean Davis
21k
2
votes
0
replies
2.0k
views
Answer:
A: GEOquery::getGEO warning: not all columns named in 'colClasses' exist
8.0 years ago
Sean Davis
21k
2
votes
0
replies
1.3k
views
Answer:
A: Limma -decideTests interpretation for M-values
8.2 years ago
Sean Davis
21k
3
votes
1
reply
1.6k
views
Answer:
A: very high adjusted P-vals using Illumina data from GEO
8.3 years ago
Sean Davis
21k
2
votes
0
replies
2.2k
views
Answer:
A: Regarding somatic signature package
8.3 years ago
Sean Davis
21k
1
vote
0
replies
1.6k
views
Answer:
A: GEOquery: Shifted data columns in phenotype data
8.3 years ago
Sean Davis
21k
1,342 results • Page
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