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Comment: C: biomaRt getGene error
10.1 years ago davide risso ▴ 980
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biomaRt getGene error
biomart
updated 10.1 years ago by ▴ 800 • written 10.1 years ago by ▴ 980
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Comment: C: RUVseq PCA on raw data, whereas DESeq suggests stabilization
10.1 years ago davide risso ▴ 980
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4.9k
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Answer: A: RUVseq PCA on raw data, whereas DESeq suggests stabilization
10.1 years ago davide risso ▴ 980
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3.1k
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Comment: C: Workflows in BioC 3.2
10.2 years ago davide risso ▴ 980
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Answer: A: RUVSeq DE analysis for data with replicate samples and 4 conditions
10.3 years ago davide risso ▴ 980
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3.7k
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Answer: A: RUVSeq DE analysis for data with replicate samples and 4 conditions
10.4 years ago davide risso ▴ 980
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Comment: C: How to use normalized values by EDASeq in edgeR?
10.4 years ago davide risso ▴ 980
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Comment: C: How to use normalized values by EDASeq in edgeR?
10.4 years ago davide risso ▴ 980
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4.0k
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Answer: A: How to use normalized values by EDASeq in edgeR?
10.4 years ago davide risso ▴ 980
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Comment: C: RUVseq for microRNAs
10.4 years ago davide risso ▴ 980
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Answer: A: LAPACK/BLAS error with edgeR GLM
updated 10.4 years ago by 53k • written 10.5 years ago by ▴ 980
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3.0k
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Answer: A: RUVseq for microRNAs
10.5 years ago davide risso ▴ 980
2
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Answer: A: edgeR: annotation and isoform analysis alternatives
10.6 years ago davide risso ▴ 980
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2
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9.6k
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Answer: A: Normalised counts from RUVg in RUVSeq
10.6 years ago davide risso ▴ 980
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6.0k
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Answer: A: DESeq2 results with RUVSeq values
10.6 years ago davide risso ▴ 980
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6.0k
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Answer: A: DESeq2 results with RUVSeq values
10.6 years ago davide risso ▴ 980
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6.0k
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Answer: A: DESeq2 results with RUVSeq values
10.6 years ago davide risso ▴ 980
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1
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3.2k
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Answer: A: Normalisation before RUVg and RUV2?
10.6 years ago davide risso ▴ 980
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4.4k
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Answer: A: Intepretation of RUVseq/edgeR logFC
10.7 years ago davide risso ▴ 980
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3.8k
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Comment: C: RUV: removing unwanted variation in RNA-seq
10.7 years ago davide risso ▴ 980
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1.6k
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RUVSeq installation problem
RUVSeq
11.3 years ago • updated 11.2 years ago davide risso ▴ 980
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Answer: A: RUVSeq installation problem
11.2 years ago davide risso ▴ 980
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3.5k
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Comment: C: Issue with RUVs
11.3 years ago davide risso ▴ 980
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3.5k
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Comment: C: Issue with RUVs
11.3 years ago davide risso ▴ 980
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3.5k
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Answer: A: Issue with RUVs
11.3 years ago davide risso ▴ 980
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2.6k
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Comment: C: Tissue heterogeneity and TMM normalization
11.3 years ago davide risso ▴ 980
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RUVSeq package installation
11.3 years ago davide risso ▴ 980
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13k
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Answer: A: RNA-Seq, generate batch-free count matrix
11.5 years ago davide risso ▴ 980
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3.2k
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Comment: C: EDASeq within normalization
12.2 years ago davide risso ▴ 980
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3.2k
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Answer: A: EDASeq within normalization
12.2 years ago davide risso ▴ 980
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2.0k
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Answer: A: problem in reading bam files with EDASeq
13.9 years ago davide risso ▴ 980
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