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Answer: Answer: How to retrieve gene ontology GO class from gene list?
27 days ago James W. MacDonald 66k
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264
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Comment: Comment: How to retrieve gene ontology GO class?
28 days ago James W. MacDonald 66k
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1
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328
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Comment: Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
28 days ago James W. MacDonald 66k
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295
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Comment: Comment: Error EPICv2 ChAMP
29 days ago James W. MacDonald 66k
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295
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Answer: Answer: Error EPICv2 ChAMP
29 days ago James W. MacDonald 66k
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141
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Answer: Answer: FDR via q-value
29 days ago James W. MacDonald 66k
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328
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Answer: Answer: Error for AnnotationForge makeOrgPackageFromNCBI function
29 days ago James W. MacDonald 66k
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198
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Comment: Comment: Error retrieving ensembl gene id using biomaRt...
4 weeks ago James W. MacDonald 66k
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198
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Answer: Answer: Error retrieving ensembl gene id using biomaRt...
4 weeks ago James W. MacDonald 66k
1
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233
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Answer: Answer: OrgDb for maize
4 weeks ago James W. MacDonald 66k
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156
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Answer: Answer: SNP locus package for mouse?
5 weeks ago James W. MacDonald 66k
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224
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Answer: Answer: flowStats Search Error
5 weeks ago James W. MacDonald 66k
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138
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Comment: Comment: what is the sampleFiles
5 weeks ago James W. MacDonald 66k
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1.1k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
5 weeks ago James W. MacDonald 66k
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1.1k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
5 weeks ago James W. MacDonald 66k
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2
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1.1k
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Answer: Answer: Convert Seurat Object to Summarised Experiment or ExpressionSet
5 weeks ago James W. MacDonald 66k
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526
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Comment: Comment: GSVA on separate healthy and disease datasets
5 weeks ago James W. MacDonald 66k
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464
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Comment: Comment: Not fully paired differential gene expression analysis
5 weeks ago James W. MacDonald 66k
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0
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371
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Answer: Answer: Why is my gene not significantly differentially expressed?
5 weeks ago James W. MacDonald 66k
2
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464
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Answer: Answer: Not fully paired differential gene expression analysis
6 weeks ago James W. MacDonald 66k
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164
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Answer: Answer: BAM write error in HTSeqGenie
6 weeks ago James W. MacDonald 66k
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1
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526
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Answer: Answer: GSVA on separate healthy and disease datasets
6 weeks ago James W. MacDonald 66k
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1
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483
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Comment: Comment: Obtaining pheno data from CEL files
6 weeks ago James W. MacDonald 66k
2
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1
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371
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Answer: Answer: permutation test in edgeR
6 weeks ago James W. MacDonald 66k
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193
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Answer: Answer: How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
6 weeks ago James W. MacDonald 66k
1
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285
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Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
6 weeks ago James W. MacDonald 66k
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1
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333
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Comment: Comment: Help with design.matrix
6 weeks ago James W. MacDonald 66k
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1
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285
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Answer: Answer: Lib sizes in the DGE object are different from original lib sizes
6 weeks ago James W. MacDonald 66k
1
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0
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265
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Answer: Answer: MethylKit read issue
6 weeks ago James W. MacDonald 66k
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1
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333
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Answer: Answer: Help with design.matrix
6 weeks ago James W. MacDonald 66k
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184
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Comment: Comment: What to the log 2 fold changes mean using LRT on time course in DESeq2
6 weeks ago James W. MacDonald 66k
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1
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184
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Answer: Answer: What to the log 2 fold changes mean using LRT on time course in DESeq2
6 weeks ago James W. MacDonald 66k
1
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0
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192
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Answer: Answer: DESeq2 - Missing values in count matrix
6 weeks ago James W. MacDonald 66k
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1
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462
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
6 weeks ago James W. MacDonald 66k
0
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1
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462
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Answer: Answer: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
6 weeks ago James W. MacDonald 66k
0
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1
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209
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Answer: Answer: voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
6 weeks ago James W. MacDonald 66k
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0
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483
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Comment: Comment: Obtaining pheno data from CEL files
7 weeks ago James W. MacDonald 66k
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0
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373
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Comment: Comment: unable to access Annotationhub latest record
7 weeks ago James W. MacDonald 66k
0
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1
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483
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Comment: Comment: Obtaining pheno data from CEL files
7 weeks ago James W. MacDonald 66k
0
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1
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373
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Answer: Answer: unable to access Annotationhub latest record
7 weeks ago James W. MacDonald 66k
0
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0
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177
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Comment: Comment: No output from read.bismark with bismark cov.files
7 weeks ago James W. MacDonald 66k
0
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1
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189
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Answer: Answer: pca with VST of DESeq2 give 100% variance in PC1
7 weeks ago James W. MacDonald 66k
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170
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Answer: Answer: Multiple affymatrix IDs mapping to a single gene name
7 weeks ago James W. MacDonald 66k
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2
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450
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Comment: Comment: Internet connection for Bioconductor packages in Rstudio in Iran...
7 weeks ago James W. MacDonald 66k
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1
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450
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Comment: Comment: Internet connection for Bioconductor packages in Rstudio in Iran...
7 weeks ago James W. MacDonald 66k
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0
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129
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Answer: Answer: Brachypodium distachyon db
7 weeks ago James W. MacDonald 66k
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1
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202
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Answer: Answer: How to make GSEAplot with chip set
7 weeks ago James W. MacDonald 66k
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1
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194
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Answer: Answer: Gene Ontology doubt
7 weeks ago James W. MacDonald 66k
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372
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Comment: Comment: fgsea fork
7 weeks ago James W. MacDonald 66k
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2
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267
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Answer: Answer: Minfi - estimatecellscount
7 weeks ago James W. MacDonald 66k
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