Hi, I am trying to access a recently added annotation of EPICv2 DNA methylation array from AnnotationHub using the code below but cannot retrieve it. I found this modified manifest useful from recent paper; https://bioconductor.org/packages/devel/data/annotation/vignettes/EPICv2manifest/inst/doc/EPICv2manifest.html
> ah <- AnnotationHub()
> EPICv2manifest <- ah[["AH116484"]]
Error: AH116484 added after current Hub snapshot date.
added: 2024-02-09
snapshot date: 2023-10-23
To access this resource update your version of Bioconductor
R 4.3.3, Bioconductor 3.18, BiocManager 1.30.22, AnnotationHub 3.10.0
Do I need to update Bioconductor to development version? that needs R to be 4.4 and I don't want that, any quick fix plz? Thanks
yeah, just thought if there is any other option.
No, everything in Bioconductor is tightly linked to the versions of R and Bioconductor to ensure operability. So devel packages (in spring at least) require R-devel.