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Comment: Comment: Batch Effect Correction, Gene Filtering
8 weeks ago James W. MacDonald 65k
2
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0
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481
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Comment: Comment: Batch Effect Correction, Gene Filtering
8 weeks ago James W. MacDonald 65k
2
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1
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481
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Answer: Answer: Batch Effect Correction, Gene Filtering
8 weeks ago James W. MacDonald 65k
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1.2k
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Comment: Comment: Issue with Biomart- cannot access ensembl
8 weeks ago James W. MacDonald 65k
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242
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Answer: Answer: Non-empty droplets versus good quality cells
8 weeks ago James W. MacDonald 65k
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1
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410
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Comment: Comment: Unable to annotate ExpressionSet object from hugene11st chip
8 weeks ago James W. MacDonald 65k
4
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2
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253
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Answer: Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
8 weeks ago James W. MacDonald 65k
2
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1
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290
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Answer: Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
8 weeks ago James W. MacDonald 65k
0
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1
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410
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Answer: Answer: Unable to annotate ExpressionSet object from hugene11st chip
8 weeks ago James W. MacDonald 65k
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0
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247
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Answer: Answer: Perfoming clumping using ieugwasr package
9 weeks ago James W. MacDonald 65k
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0
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183
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Answer: Answer: problem with ClusterRepro function
9 weeks ago James W. MacDonald 65k
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1
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458
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Comment: Comment: DESeq2 filtering vs edgeR filtering
9 weeks ago James W. MacDonald 65k
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0
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1.9k
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Comment: Comment: Problem at champ.load
9 weeks ago James W. MacDonald 65k
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1
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3.4k
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Comment: Comment: error in ChAMP loading file
9 weeks ago James W. MacDonald 65k
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1
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289
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Answer: Answer: Error in classify_gene_pairs
9 weeks ago James W. MacDonald 65k
0
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0
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161
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Answer: Answer: Is random access by row index possible for an indexed VCF file?
9 weeks ago James W. MacDonald 65k
0
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1
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454
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Comment: Comment: DESeq and SVA for batch effect
10 weeks ago James W. MacDonald 65k
0
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1
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454
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Comment: Comment: DESeq and SVA for batch effect
10 weeks ago James W. MacDonald 65k
1
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1
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277
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Answer: Answer: supportedOrganisms() in goseq producing Error in names(trackIds)
10 weeks ago James W. MacDonald 65k
1
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0
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197
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Answer: Answer: Error with BSgenome, wanting to analyse non-model species with ATACseqQC
10 weeks ago James W. MacDonald 65k
0
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2
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454
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Answer: Answer: DESeq and SVA for batch effect
10 weeks ago James W. MacDonald 65k
0
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1
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540
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Comment: Comment: Constrast for Time Course Experiments using Limma
10 weeks ago James W. MacDonald 65k
0
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0
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382
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Comment: Comment: Factor vs Character in design
10 weeks ago James W. MacDonald 65k
1
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2
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382
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Comment: Comment: Factor vs Character in design
10 weeks ago James W. MacDonald 65k
1
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1
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382
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Answer: Answer: Factor vs Character in design
10 weeks ago James W. MacDonald 65k
0
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0
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1.5k
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Comment: Comment: How to get DMR for Infinium methylation EPIC v2
10 weeks ago James W. MacDonald 65k
0
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0
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318
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Comment: Comment: Would I treat surrogate variables as batches?
10 weeks ago James W. MacDonald 65k
1
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0
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502
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Comment: Comment: DGE analysis with LIMMA
11 weeks ago James W. MacDonald 65k
2
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1
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502
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Comment: Comment: DGE analysis with LIMMA
11 weeks ago James W. MacDonald 65k
0
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0
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180
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Answer: Answer: error in Matrix function
11 weeks ago James W. MacDonald 65k
0
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1
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318
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Answer: Answer: Would I treat surrogate variables as batches?
11 weeks ago James W. MacDonald 65k
2
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1
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502
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Answer: Answer: DGE analysis with LIMMA
11 weeks ago James W. MacDonald 65k
0
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0
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258
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Answer: Answer: Changed DESeq2 comparison value but the heatmap is still the same
11 weeks ago James W. MacDonald 65k
2
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1
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474
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Comment: Comment: Estimating Cell Counts for EPIC V2 array data
11 weeks ago James W. MacDonald 65k
3
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1
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474
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Answer: Answer: Estimating Cell Counts for EPIC V2 array data
11 weeks ago James W. MacDonald 65k
2
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0
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372
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Answer: Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
11 weeks ago James W. MacDonald 65k
0
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0
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291
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Comment: Comment: impute.knn produces different results based on matrix order
11 weeks ago James W. MacDonald 65k
0
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0
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192
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Answer: Answer: Matrix multiplication error to estimate telomere length
11 weeks ago James W. MacDonald 65k
0
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1
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291
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Answer: Answer: impute.knn produces different results based on matrix order
11 weeks ago James W. MacDonald 65k
1
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2
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473
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Answer: Answer: "could not find function "readTSGE" in package ctsGE" Error occurs when trying t
11 weeks ago James W. MacDonald 65k
0
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0
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760
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Comment: Comment: Help creating BSgenome object for new canine and feline genomes?
11 weeks ago James W. MacDonald 65k
0
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0
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345
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Answer: Answer: Error in featureCounts matrix
11 weeks ago James W. MacDonald 65k
0
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1
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785
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Comment: Comment: StringDB: Cannot finish their tutorial because of an error
11 weeks ago James W. MacDonald 65k
0
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0
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590
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Comment: Comment: limma fo continous variables
11 weeks ago James W. MacDonald 65k
1
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0
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330
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Answer: Answer: locfunc not found in DESeq2
12 weeks ago James W. MacDonald 65k
0
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1
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435
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Comment: Comment: Comparing gene expression across three tissue types to identify any difference.
12 weeks ago James W. MacDonald 65k
1
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1
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435
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Answer: Answer: Comparing gene expression across three tissue types to identify any difference.
12 weeks ago James W. MacDonald 65k
1
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1
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561
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Comment: Comment: Downloading package mixOmics
12 weeks ago James W. MacDonald 65k
1
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0
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340
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Answer: Answer: Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
12 weeks ago James W. MacDonald 65k
1
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0
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299
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Answer: Answer: Mapping LOC genes between species using Orthology.eg.db (or a similar tool)
12 weeks ago James W. MacDonald 65k
8,387 results • Page 3 of 168
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