Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
2.2k
views
Answer: Answer: Combining two bulk RNA seq datasets
20 months ago W. Evan Johnson ▴ 870
0
votes
0
replies
1.9k
views
Comment: Comment: A ComBat-seq issue: the covariates are confounded
22 months ago W. Evan Johnson ▴ 870
0
votes
1
reply
999
views
Comment: Comment: combat output NaN
2.3 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
2.3k
views
Comment: Comment: Problem in analysing microarray data with ComBat
3.0 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
2.9k
views
Comment: C: DeSeq2 with three batches - Remove batch Effect
5.4 years ago W. Evan Johnson ▴ 870
2
votes
0
replies
3.8k
views
Answer: A: sva ComBat implementation for multiple sources of batch effects
5.8 years ago W. Evan Johnson ▴ 870
1
vote
1
reply
3.8k
views
Answer: A: sva ComBat implementation for multiple sources of batch effects
5.8 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
1.4k
views
Answer: A: problem for interpretation of resulted ComBat() plot
6.2 years ago W. Evan Johnson ▴ 870
0
votes
1
reply
5.5k
views
Comment: C: ComBat normalization for batch effect change 0 values
6.8 years ago W. Evan Johnson ▴ 870
2
votes
1
reply
1.6k
views
Rsubread for microbiome data analysis: genome >4GB
alignment rsubread microbiome
updated 7.3 years ago by ★ 3.6k • written 7.3 years ago by ▴ 870
0
votes
0
replies
2.8k
views
Answer: A: A problem in using Combat
7.7 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
4.3k
views
Answer: A: Running ComBat Without a Batch Argument to Correct for Continuous, Numeric Covar
8.4 years ago W. Evan Johnson ▴ 870
1
vote
0
replies
2.7k
views
Comment: C: PCA of bladderdata ("Batch effects and confounders" tutorial)
9.7 years ago W. Evan Johnson ▴ 870
0
votes
1
reply
5.7k
views
Comment: C: Method for batch correction
9.9 years ago W. Evan Johnson ▴ 870
5
votes
2
replies
4.3k
views
Answer: A: SVA: Including variable of interest in ComBat model matrix
9.9 years ago W. Evan Johnson ▴ 870
3
votes
1
reply
5.7k
views
Answer: A: Method for batch correction
9.9 years ago W. Evan Johnson ▴ 870
1
vote
1
reply
2.6k
views
Answer: A: Evaluation of diagnostic plot resulted from ComBat function regarding batch effe
10.1 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
8.3k
views
Answer: A: ComBat with multiple batches
10.1 years ago W. Evan Johnson ▴ 870
1
vote
0
replies
6.4k
views
Answer: A: Running Combat in SVA with NA values in matrix
10.2 years ago W. Evan Johnson ▴ 870
1
vote
0
replies
6.4k
views
Answer: A: Combat generating negative values, should I log2 transform first?
10.4 years ago W. Evan Johnson ▴ 870
3
votes
1
reply
6.7k
views
Answer: A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
10.4 years ago W. Evan Johnson ▴ 870
2
votes
3
replies
12k
views
Answer: A: batch effect : comBat or blocking in limma ?
10.4 years ago W. Evan Johnson ▴ 870
0
votes
1
reply
2.0k
views
Comment: C: Reproducibility of results with ComBat
10.5 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
3.9k
views
Answer: A: Prior plots from COMBAT
10.5 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
7.8k
views
Comment: C: ComBat: Error non-conformable arguments
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ▴ 870
0
votes
0
replies
5.3k
views
Answer: A: sva::ComBat without covariate of interest?
11.3 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
4.5k
views
Answer: A: ComBat: should the variable of interest be included into model matrix
11.3 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
2.0k
views
Answer: A: barcode support for other platforms
11.5 years ago W. Evan Johnson ▴ 870
0
votes
3
replies
2.5k
views
ComBat
Microarray rama Microarray rama
updated 11.7 years ago by ▴ 10 • written 11.7 years ago by ▴ 870
0
votes
3
replies
2.3k
views
ComBat:RT-PCR Data
Microarray Microarray
updated 11.8 years ago by ▴ 20 • written 11.8 years ago by ▴ 870
0
votes
4
replies
2.2k
views
combat error message
miRNA Normalization affy miRNA Normalization affy
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ▴ 870
0
votes
0
replies
2.0k
views
Answer: A: ComBat - stuck please help!
11.8 years ago W. Evan Johnson ▴ 870
0
votes
1
reply
2.4k
views
Comment: C: Combat Continuous
11.8 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
2.5k
views
ComBat: 2 adjustment variables & continuous adjustment variables
GO Category sva GO Category sva
12.0 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
1.3k
views
Answer: A: Design matrix in Combat algorithm
12.1 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
4.8k
views
Answer: A: ComBat: Error when including numerical covariates in model (numCovs)
12.1 years ago W. Evan Johnson ▴ 870
0
votes
2
replies
4.8k
views
ComBat: Error when including numerical covariates in model (numCovs)
sva sva
updated 12.1 years ago by ▴ 20 • written 12.1 years ago by ▴ 870
0
votes
1
reply
1.7k
views
Questions on Combat in methylation data Thank you for your help
GO sva GO sva
updated 12.2 years ago by ▴ 440 • written 12.2 years ago by ▴ 870
0
votes
2
replies
5.7k
views
Normalization before ComBat
Microarray Normalization probe affy frma Microarray Normalization probe affy frma
updated 12.4 years ago by ▴ 40 • written 12.4 years ago by ▴ 870
0
votes
0
replies
2.4k
views
sva/ComBat with missing values?
impute impute
12.4 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
1.9k
views
Answer: A: Running ComBat in parallel
12.5 years ago W. Evan Johnson ▴ 870
0
votes
2
replies
1.9k
views
Running ComBat in parallel
12.5 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
11k
views
Answer: A: ComBat_ Error in solve.default(t(design) %*% design): Lapack routine dgesv: syst
12.5 years ago W. Evan Johnson ▴ 870
1
vote
7
replies
11k
views
ComBat_ Error in solve.default(t(design) %*% design): Lapack routine dgesv: system is exactly singular: U[4, 4] = 0
12.5 years ago W. Evan Johnson ▴ 870
0
votes
1
reply
11k
views
Comment: C: ComBat_ Error in solve.default(t(design) %*% design): Lapack routine dgesv: syst
12.5 years ago W. Evan Johnson ▴ 870
0
votes
1
reply
11k
views
Comment: C: ComBat_ Error in solve.default(t(design) %*% design): Lapack routine dgesv: syst
12.5 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
2.6k
views
Answer: A: ComBat: Could it utilize technical replicates?
12.6 years ago W. Evan Johnson ▴ 870
0
votes
0
replies
2.4k
views
Answer: A: combining/merging several ExpressionSet objects from SCAN
12.6 years ago W. Evan Johnson ▴ 870
3
votes
1
reply
2.6k
views
Answer: A: ComBat: Could it utilize technical replicates?
12.6 years ago W. Evan Johnson ▴ 870
0
votes
2
replies
1.8k
views
use Combat to adjust for hidden variables without knowing batch effect
Clustering sva Clustering sva
12.6 years ago W. Evan Johnson ▴ 870
88 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6