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5.6k
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Comment:
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
20 months ago
Michael Love
43k
2
votes
0
replies
926
views
Answer:
Answer: Fold change calculation in Diffbind vs. DESEQ2?
20 months ago
Michael Love
43k
0
votes
1
reply
1.1k
views
Answer:
Answer: Timecourse RNASeq analysis
20 months ago
Michael Love
43k
0
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0
replies
603
views
Answer:
Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar
20 months ago
Michael Love
43k
0
votes
0
replies
776
views
Answer:
Answer: PCA plot suggestions
20 months ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Answer:
Answer: Deseq2. decontXcounts not integers. Useful alternative?
20 months ago
Michael Love
43k
0
votes
0
replies
885
views
Answer:
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
20 months ago
Michael Love
43k
1
vote
0
replies
802
views
Comment:
Comment: Different Shrunk Log2FC according with reference
20 months ago
Michael Love
43k
2
votes
0
replies
921
views
Answer:
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
20 months ago
Michael Love
43k
0
votes
1
reply
5.6k
views
Comment:
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
20 months ago
Michael Love
43k
1
vote
0
replies
1.2k
views
Comment:
Comment: DESeq2 - dispersion estimation when there is none
20 months ago
Michael Love
43k
2
votes
1
reply
1.2k
views
Answer:
Answer: DESeq2 - dispersion estimation when there is none
20 months ago
Michael Love
43k
0
votes
0
replies
1.3k
views
Comment:
Comment: DESeq filtering specific to contrasts
21 months ago
Michael Love
43k
0
votes
0
replies
1.9k
views
Comment:
Comment: DESeq2 setting significant p-value
21 months ago
Michael Love
43k
0
votes
1
reply
1.3k
views
Comment:
Comment: DESeq filtering specific to contrasts
21 months ago
Michael Love
43k
0
votes
1
reply
4.4k
views
Comment:
Comment: Which input file is used for DGEList in EgdeR?
21 months ago
Michael Love
43k
0
votes
1
reply
5.6k
views
Comment:
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
21 months ago
Michael Love
43k
0
votes
0
replies
1.0k
views
Comment:
Comment: DEG with low counts
21 months ago
Michael Love
43k
0
votes
1
reply
1.3k
views
Comment:
Comment: DESeq filtering specific to contrasts
21 months ago
Michael Love
43k
0
votes
0
replies
463
views
Answer:
Answer: rlog transformation
21 months ago
Michael Love
43k
0
votes
0
replies
1.4k
views
Answer:
Answer: ONT long-read RNA sequencing - data analysis options
21 months ago
Michael Love
43k
0
votes
1
reply
3.5k
views
Answer:
Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
21 months ago
Michael Love
43k
0
votes
0
replies
442
views
Answer:
Answer: covariate with negative and positive values
21 months ago
Michael Love
43k
0
votes
1
reply
1.9k
views
Comment:
Comment: DESeq2 setting significant p-value
21 months ago
Michael Love
43k
0
votes
0
replies
1.4k
views
Comment:
Comment: How to correct for known and surrogate variables in DESeq2?
21 months ago
Michael Love
43k
0
votes
0
replies
811
views
Comment:
Comment: Interaction Terms in DESeq2 - Shrinkage
21 months ago
Michael Love
43k
1
vote
1
reply
1.0k
views
Answer:
Answer: How to retrieve detailed regression results from deseq2
21 months ago
Michael Love
43k
0
votes
1
reply
1.0k
views
Answer:
Answer: DEG with low counts
21 months ago
Michael Love
43k
1
vote
1
reply
4.4k
views
Comment:
Comment: Which input file is used for DGEList in EgdeR?
21 months ago
Michael Love
43k
0
votes
0
replies
882
views
Comment:
Comment: Interaction term vs grouping variable design considerations
21 months ago
Michael Love
43k
0
votes
0
replies
882
views
Answer:
Answer: Interaction term vs grouping variable design considerations
21 months ago
Michael Love
43k
0
votes
0
replies
914
views
Answer:
Answer: IgG control in RIP-seq with Deseq2
21 months ago
Michael Love
43k
0
votes
0
replies
787
views
Answer:
Answer: Regressing out batch effects
21 months ago
Michael Love
43k
0
votes
0
replies
1.7k
views
Comment:
Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
21 months ago
Michael Love
43k
0
votes
1
reply
5.6k
views
Comment:
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
21 months ago
Michael Love
43k
0
votes
2
replies
5.6k
views
Comment:
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
21 months ago
Michael Love
43k
0
votes
1
reply
5.6k
views
Comment:
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
21 months ago
Michael Love
43k
1
vote
1
reply
1.7k
views
Comment:
Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
21 months ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Comment:
Comment: Abnormal Low Dispersion Gene Population in DESeq2
21 months ago
Michael Love
43k
1
vote
0
replies
528
views
Answer:
Answer: DESeq2 , filter and theta arguments in resutlts()
21 months ago
Michael Love
43k
0
votes
1
reply
1.1k
views
Answer:
Answer: Abnormal Low Dispersion Gene Population in DESeq2
21 months ago
Michael Love
43k
0
votes
0
replies
851
views
Answer:
Answer: Convert transcriptomic bam to genomic bam?
21 months ago
Michael Love
43k
0
votes
1
reply
1.4k
views
Comment:
Comment: Doing comparison of RNA-seq data using EdgeR
21 months ago
Michael Love
43k
0
votes
0
replies
454
views
Answer:
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
21 months ago
Michael Love
43k
0
votes
1
reply
1.4k
views
Answer:
Answer: Doing comparison of RNA-seq data using Deseq2
21 months ago
Michael Love
43k
1
vote
0
replies
1.4k
views
Answer:
Answer: PCA of different bacterial species
21 months ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Comment:
Comment: Clarification on Library Size Normalization After Using tximport with countsFrom
21 months ago
Michael Love
43k
0
votes
1
reply
1.1k
views
Answer:
Answer: Clarification on Library Size Normalization After Using tximport with countsFrom
21 months ago
Michael Love
43k
0
votes
0
replies
623
views
Answer:
Answer: collapseReplicates dimension error
21 months ago
Michael Love
43k
1
vote
1
reply
916
views
Answer:
Answer: DESeq2 "Contrast" option
21 months ago
Michael Love
43k
8,164 results • Page
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