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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
20 months ago Michael Love 43k
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Answer: Answer: Fold change calculation in Diffbind vs. DESEQ2?
20 months ago Michael Love 43k
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1.1k
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Answer: Answer: Timecourse RNASeq analysis
20 months ago Michael Love 43k
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Answer: Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar
20 months ago Michael Love 43k
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776
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Answer: Answer: PCA plot suggestions
20 months ago Michael Love 43k
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Answer: Answer: Deseq2. decontXcounts not integers. Useful alternative?
20 months ago Michael Love 43k
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885
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Answer: Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
20 months ago Michael Love 43k
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802
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Comment: Comment: Different Shrunk Log2FC according with reference
20 months ago Michael Love 43k
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921
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Answer: Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
20 months ago Michael Love 43k
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5.6k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
20 months ago Michael Love 43k
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0
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1.2k
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Comment: Comment: DESeq2 - dispersion estimation when there is none
20 months ago Michael Love 43k
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1.2k
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Answer: Answer: DESeq2 - dispersion estimation when there is none
20 months ago Michael Love 43k
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1.3k
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Comment: Comment: DESeq filtering specific to contrasts
21 months ago Michael Love 43k
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1.9k
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Comment: Comment: DESeq2 setting significant p-value
21 months ago Michael Love 43k
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1.3k
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Comment: Comment: DESeq filtering specific to contrasts
21 months ago Michael Love 43k
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4.4k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
21 months ago Michael Love 43k
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5.6k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
21 months ago Michael Love 43k
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1.0k
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Comment: Comment: DEG with low counts
21 months ago Michael Love 43k
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1.3k
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Comment: Comment: DESeq filtering specific to contrasts
21 months ago Michael Love 43k
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463
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Answer: Answer: rlog transformation
21 months ago Michael Love 43k
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1.4k
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Answer: Answer: ONT long-read RNA sequencing - data analysis options
21 months ago Michael Love 43k
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1
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3.5k
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Answer: Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
21 months ago Michael Love 43k
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442
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Answer: Answer: covariate with negative and positive values
21 months ago Michael Love 43k
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1.9k
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Comment: Comment: DESeq2 setting significant p-value
21 months ago Michael Love 43k
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1.4k
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Comment: Comment: How to correct for known and surrogate variables in DESeq2?
21 months ago Michael Love 43k
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811
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Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
21 months ago Michael Love 43k
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1
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1.0k
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Answer: Answer: How to retrieve detailed regression results from deseq2
21 months ago Michael Love 43k
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1.0k
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Answer: Answer: DEG with low counts
21 months ago Michael Love 43k
1
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1
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4.4k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
21 months ago Michael Love 43k
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0
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882
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Comment: Comment: Interaction term vs grouping variable design considerations
21 months ago Michael Love 43k
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0
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882
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Answer: Answer: Interaction term vs grouping variable design considerations
21 months ago Michael Love 43k
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0
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914
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Answer: Answer: IgG control in RIP-seq with Deseq2
21 months ago Michael Love 43k
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787
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Answer: Answer: Regressing out batch effects
21 months ago Michael Love 43k
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1.7k
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
21 months ago Michael Love 43k
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1
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5.6k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
21 months ago Michael Love 43k
0
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2
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5.6k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
21 months ago Michael Love 43k
0
votes
1
reply
5.6k
views
Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
21 months ago Michael Love 43k
1
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1
reply
1.7k
views
Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
21 months ago Michael Love 43k
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0
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1.1k
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Comment: Comment: Abnormal Low Dispersion Gene Population in DESeq2
21 months ago Michael Love 43k
1
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0
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528
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Answer: Answer: DESeq2 , filter and theta arguments in resutlts()
21 months ago Michael Love 43k
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1
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1.1k
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Answer: Answer: Abnormal Low Dispersion Gene Population in DESeq2
21 months ago Michael Love 43k
0
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0
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851
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Answer: Answer: Convert transcriptomic bam to genomic bam?
21 months ago Michael Love 43k
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1
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1.4k
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
21 months ago Michael Love 43k
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454
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Answer: Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
21 months ago Michael Love 43k
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1
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1.4k
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Answer: Answer: Doing comparison of RNA-seq data using Deseq2
21 months ago Michael Love 43k
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0
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1.4k
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Answer: Answer: PCA of different bacterial species
21 months ago Michael Love 43k
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0
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1.1k
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Comment: Comment: Clarification on Library Size Normalization After Using tximport with countsFrom
21 months ago Michael Love 43k
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1.1k
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Answer: Answer: Clarification on Library Size Normalization After Using tximport with countsFrom
21 months ago Michael Love 43k
0
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0
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623
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Answer: Answer: collapseReplicates dimension error
21 months ago Michael Love 43k
1
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1
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916
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Answer: Answer: DESeq2 "Contrast" option
21 months ago Michael Love 43k
8,164 results • Page 6 of 164
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