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Comment: Comment: DESeq2: Difference in DEG numbers when switching reference condition (numerator,
2.1 years ago Michael Love 43k
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922
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Answer: Answer: DESeq2: Difference in DEG numbers when switching reference condition (numerator,
2.1 years ago Michael Love 43k
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1.9k
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Answer: Answer: DESeq2 collinearity, adjusting for covariates, and the ground truth
2.1 years ago Michael Love 43k
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1.3k
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Comment: Comment: Different genes expression with limma
2.1 years ago Michael Love 43k
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2.6k
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
2.1 years ago Michael Love 43k
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2.6k
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
2.1 years ago Michael Love 43k
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2.6k
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Answer: Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
2.1 years ago Michael Love 43k
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6.5k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
2.1 years ago Michael Love 43k
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0
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2.8k
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Answer: Answer: DESeq2 : stat or lfcshrink for GSEA analysis
2.1 years ago Michael Love 43k
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6.5k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
2.2 years ago Michael Love 43k
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1.4k
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Answer: Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
2.2 years ago Michael Love 43k
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1.6k
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Comment: Comment: DESeq2 estimateSizeFactors iterate takes too long
2.2 years ago Michael Love 43k
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0
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665
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Answer: Answer: Lower FDR cutoff gives more gene counts
2.2 years ago Michael Love 43k
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822
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Answer: Answer: Using DESeq2 statistical framework with to identify differentially expressed loc
2.2 years ago Michael Love 43k
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1.4k
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Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
2.2 years ago Michael Love 43k
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783
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Answer: Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
2.2 years ago Michael Love 43k
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0
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901
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Answer: Answer: How to use DESeq results with LRT vs. with Wald's test
2.2 years ago Michael Love 43k
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0
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905
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Answer: Answer: DEseq2 : Complex design with a mixture of male and female mice
2.2 years ago Michael Love 43k
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1.4k
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Answer: Answer: Help Subsetting DDS for plotPCA for contrast groups
2.2 years ago Michael Love 43k
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1.2k
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Answer: Answer: Deseq2 - Pairwise results from 6 conditions - error non-conformable arguments
2.2 years ago Michael Love 43k
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1.5k
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Comment: Comment: Unable to replicate figures of CBCS data after nSolver and RUVSeq normalization
2.2 years ago Michael Love 43k
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0
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823
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Answer: Answer: DESeq2 and determining effects of treatment on a priori/candidate genes from a b
2.2 years ago Michael Love 43k
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1.1k
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Answer: Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
2.2 years ago Michael Love 43k
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1.5k
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Answer: Answer: Can DESeq2 be used to compare groups of genes?
2.2 years ago Michael Love 43k
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1.4k
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Answer: Answer: DESeq2 for microbiome data: raw counts or percentages?
2.2 years ago Michael Love 43k
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1
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2.3k
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Comment: Comment: DESeq2 unable to handle large count values
2.2 years ago Michael Love 43k
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0
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1.3k
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Answer: Answer: tximeta errors: couldn't find matching transcriptome, returning non-ranged Summa
2.2 years ago Michael Love 43k
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1
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896
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Answer: Answer: Swimming downstream: transcript fold changes
2.2 years ago Michael Love 43k
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3
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2.3k
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Answer: Answer: DESeq2 unable to handle large count values
2.2 years ago Michael Love 43k
0
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0
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2.8k
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Comment: Comment: SparseArray unable to install on Bioc 3.18
2.2 years ago Michael Love 43k
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1
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2.8k
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Comment: Comment: SparseArray unable to install on Bioc 3.18
2.2 years ago Michael Love 43k
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1
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2.8k
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Comment: Comment: SparseArray unable to install on Bioc 3.18
2.2 years ago Michael Love 43k
0
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0
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877
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Answer: Answer: DESeq2 model for two genome system
2.2 years ago Michael Love 43k
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0
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992
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Answer: Answer: DESeq2: different results with and without releveling when providing contrast
2.2 years ago Michael Love 43k
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0
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864
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Answer: Answer: Controling for Covariates With a Continuous Predictor Variable
2.2 years ago Michael Love 43k
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1
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1.0k
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Answer: Answer: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
2.2 years ago Michael Love 43k
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0
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1.3k
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Comment: Comment: rnaSeqGene workflow not available in Bioconductor 3.18
2.2 years ago Michael Love 43k
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1
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1.7k
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Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
2.2 years ago Michael Love 43k
0
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0
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1.7k
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Answer: Answer: Quickly calculating adjusted Fold Change with DESeq2
2.2 years ago Michael Love 43k
0
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1
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1.5k
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Answer: Answer: Unable to replicate figures of CBCS data after nSolver and RUVSeq normalization
2.2 years ago Michael Love 43k
0
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1
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1.2k
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Answer: Answer: Will DESeq2 be appropriate tool for analysis?
2.3 years ago Michael Love 43k
0
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0
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2.0k
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Answer: Answer: DESeq2 Error in Results Contrast and ResultsNames
2.3 years ago Michael Love 43k
0
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0
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1.4k
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Comment: Comment: Tximport Error - transcripts in quant files are not the same as tx2gene
2.3 years ago Michael Love 43k
1
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0
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1.8k
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Comment: Comment: DESeq2: Design model includes sex but only one female
2.3 years ago Michael Love 43k
0
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0
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3.2k
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Answer: Answer: DESeq2 gene length normalisation
2.3 years ago Michael Love 43k
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0
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3.2k
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Comment: Comment: DESeq2 gene length normalisation
2.3 years ago Michael Love 43k
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0
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5.6k
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Comment: Comment: DESeq2 - Differences between plotCounts and normalized counts
2.3 years ago Michael Love 43k
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1
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3.2k
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Comment: Comment: DESeq2 gene length normalisation
2.3 years ago Michael Love 43k
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1
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64k
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Comment: Comment: deseq2 filter the low counts
2.3 years ago Michael Love 43k
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0
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1.8k
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Answer: Answer: DeSeq2 normalization 16S
2.3 years ago Michael Love 43k
8,173 results • Page 9 of 164
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