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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
10 hours ago Michael Love 41k
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2.5k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 hours ago Michael Love 41k
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73
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Answer: Answer: Handling multiple differential expression comparisons
20 hours ago Michael Love 41k
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157
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Comment: Comment: Too many significant genes when integrating gtex and tcga
2 days ago Michael Love 41k
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96
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Answer: Answer: DESeq2 v1.35.0
3 days ago Michael Love 41k
0
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245
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Comment: Comment: log2FoldChange value is way too different when compared with counts(dds)
4 days ago Michael Love 41k
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1
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245
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Answer: Answer: log2FoldChange value is way too different when compared with counts(dds)
4 days ago Michael Love 41k
0
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
5 days ago Michael Love 41k
1
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0
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106
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Answer: Answer: Fold change calculation in Diffbind vs. DESEQ2?
5 days ago Michael Love 41k
0
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1
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120
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Answer: Answer: Timecourse RNASeq analysis
5 days ago Michael Love 41k
0
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101
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Answer: Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar
5 days ago Michael Love 41k
0
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208
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Answer: Answer: PCA plot suggestions
9 days ago Michael Love 41k
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216
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Answer: Answer: Deseq2. decontXcounts not integers. Useful alternative?
9 days ago Michael Love 41k
0
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154
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Answer: Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
11 days ago Michael Love 41k
1
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0
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212
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Comment: Comment: Different Shrunk Log2FC according with reference
11 days ago Michael Love 41k
2
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0
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312
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Answer: Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
12 days ago Michael Love 41k
0
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
12 days ago Michael Love 41k
1
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0
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227
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Comment: Comment: DESeq2 - dispersion estimation when there is none
12 days ago Michael Love 41k
2
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1
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227
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Answer: Answer: DESeq2 - dispersion estimation when there is none
13 days ago Michael Love 41k
0
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0
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423
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Comment: Comment: DESeq filtering specific to contrasts
16 days ago Michael Love 41k
0
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0
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748
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Comment: Comment: DESeq2 setting significant p-value
16 days ago Michael Love 41k
0
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1
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423
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Comment: Comment: DESeq filtering specific to contrasts
16 days ago Michael Love 41k
0
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1
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1.6k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
16 days ago Michael Love 41k
0
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
16 days ago Michael Love 41k
0
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0
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269
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Comment: Comment: DEG with low counts
16 days ago Michael Love 41k
0
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1
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423
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Comment: Comment: DESeq filtering specific to contrasts
16 days ago Michael Love 41k
0
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0
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136
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Answer: Answer: rlog transformation
17 days ago Michael Love 41k
0
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0
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112
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Answer: Answer: ONT long-read RNA sequencing - data analysis options
17 days ago Michael Love 41k
0
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1
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711
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Answer: Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
17 days ago Michael Love 41k
0
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0
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133
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Answer: Answer: covariate with negative and positive values
17 days ago Michael Love 41k
0
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1
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748
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Comment: Comment: DESeq2 setting significant p-value
17 days ago Michael Love 41k
0
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0
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601
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Comment: Comment: How to correct for known and surrogate variables in DESeq2?
19 days ago Michael Love 41k
0
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0
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205
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Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
19 days ago Michael Love 41k
1
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1
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243
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Answer: Answer: How to retrieve detailed regression results from deseq2
20 days ago Michael Love 41k
0
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1
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269
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Answer: Answer: DEG with low counts
20 days ago Michael Love 41k
1
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1
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1.6k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
23 days ago Michael Love 41k
0
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0
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220
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Comment: Comment: Interaction term vs grouping variable design considerations
26 days ago Michael Love 41k
0
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0
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220
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Answer: Answer: Interaction term vs grouping variable design considerations
26 days ago Michael Love 41k
0
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0
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163
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Answer: Answer: IgG control in RIP-seq with Deseq2
26 days ago Michael Love 41k
0
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0
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247
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Answer: Answer: Regressing out batch effects
26 days ago Michael Love 41k
0
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0
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433
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
4 weeks ago Michael Love 41k
0
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
4 weeks ago Michael Love 41k
0
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2
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2.5k
views
Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
4 weeks ago Michael Love 41k
0
votes
1
reply
2.5k
views
Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
4 weeks ago Michael Love 41k
1
vote
1
reply
433
views
Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
4 weeks ago Michael Love 41k
0
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0
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262
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Comment: Comment: Abnormal Low Dispersion Gene Population in DESeq2
4 weeks ago Michael Love 41k
1
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0
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156
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Answer: Answer: DESeq2 , filter and theta arguments in resutlts()
4 weeks ago Michael Love 41k
0
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1
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262
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Answer: Answer: Abnormal Low Dispersion Gene Population in DESeq2
4 weeks ago Michael Love 41k
0
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0
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171
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Answer: Answer: Convert transcriptomic bam to genomic bam?
4 weeks ago Michael Love 41k
0
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1
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356
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
5 weeks ago Michael Love 41k
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