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Limma p-values, fdr and classifyTests
limma
updated 7.0 years ago by 53k • written 21.5 years ago by ▴ 940
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1.4k
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ath1121501probe_1.0 error (was GCRMA missing value error on ATH1 chip)
probe affy probe affy
updated 7.1 years ago by 0 • written 22.0 years ago by ▴ 940
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1.5k
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double violation of normalization assumptions?
Microarray Normalization probe limma gcrma Microarray Normalization probe limma gcrma
20.1 years ago Matthew Hannah ▴ 940
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2.7k
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Answer: A: Biological replication (was RNA degradation problem)
20.1 years ago Matthew Hannah ▴ 940
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2.7k
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Answer: A: Biological replication (was RNA degradation problem)
20.1 years ago Matthew Hannah ▴ 940
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0
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2.7k
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Answer: A: Biological replication (was RNA degradation problem)
20.1 years ago Matthew Hannah ▴ 940
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0
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1.9k
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Answer: A: RNA degradation problem
20.1 years ago Matthew Hannah ▴ 940
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1
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1.4k
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RNA degradation problem
Normalization affy limma affyPLM PROcess Normalization affy limma affyPLM PROcess
updated 20.1 years ago by ▴ 810 • written 20.1 years ago by ▴ 940
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1.1k
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PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
20.4 years ago Matthew Hannah ▴ 940
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1.4k
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permutation/resampling FDR correction
Regression limma Regression limma
20.6 years ago Matthew Hannah ▴ 940
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1
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1.1k
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Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
updated 20.9 years ago by ▴ 210 • written 20.9 years ago by ▴ 940
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1
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2.4k
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Answer: A: no BioConductor posting guide
20.9 years ago Matthew Hannah ▴ 940
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2.0k
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Answer: A: Cy3 Cy5 mixup?
20.9 years ago Matthew Hannah ▴ 940
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0
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1.2k
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limma regression / fdr permutation correction
20.9 years ago Matthew Hannah ▴ 940
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0
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2.1k
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Answer: A: p-value adjustment
20.9 years ago Matthew Hannah ▴ 940
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0
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2.6k
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Answer: A: Order in which ReadAffy() and read.affybatch()
20.9 years ago Matthew Hannah ▴ 940
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0
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1.2k
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Answer: A: GCRMA: low intensity exprs estimates / pval distributions
21.0 years ago Matthew Hannah ▴ 940
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1
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1.2k
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GCRMA: low intensity exprs estimates / pval distributions
gcrma gcrma
21.0 years ago Matthew Hannah ▴ 940
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0
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1.2k
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RMA verse GCRMA, low intensity
cycle cycle
21.0 years ago Matthew Hannah ▴ 940
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0
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1.8k
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Answer: A: kyte and doolittle hydropathy values/plot - sub + sliding window mean
21.2 years ago Matthew Hannah ▴ 940
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1
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1.8k
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kyte and doolittle hydropathy values/plot - sub + sliding window mean
graph convert graph convert
21.2 years ago Matthew Hannah ▴ 940
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0
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1.1k
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limma p.values, tech replication and dup cor
affy limma oligo affy limma oligo
21.3 years ago Matthew Hannah ▴ 940
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0
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798
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gcrma - all low value output - error somewhere?
cdf affy gcrma matchprobes cdf affy gcrma matchprobes
21.3 years ago Matthew Hannah ▴ 940
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1
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1.1k
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gcrma.bg.transformation missing
gcrma gcrma
updated 21.3 years ago by ▴ 410 • written 21.3 years ago by ▴ 940
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668
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agcdf / atgenome1probe
updated 21.4 years ago by ▴ 950 • written 21.4 years ago by ▴ 940
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1.3k
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Answer: A: P value for each probe
21.4 years ago Matthew Hannah ▴ 940
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0
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954
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Limma with multiple samples but only 2 reps
limma limma
21.4 years ago Matthew Hannah ▴ 940
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0
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824
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ULYSIS Alexa Fluor labelling kit / dye bias / limma
limma limma
21.4 years ago Matthew Hannah ▴ 940
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0
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915
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Limma p-value distributions, false +ve/-ve etc...
limma limma
21.4 years ago Matthew Hannah ▴ 940
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3
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4.6k
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Selecting p-value cutoffs for differential expression
limma gcrma limma gcrma
updated 21.4 years ago by ▴ 20 • written 21.5 years ago by ▴ 940
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RE: Normalising divergent samples.
Microarray Normalization affy limma gcrma Microarray Normalization affy limma gcrma
21.4 years ago Matthew Hannah ▴ 940
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1
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1.5k
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Normalising divergent samples.
Microarray Normalization affy limma gcrma Microarray Normalization affy limma gcrma
updated 21.5 years ago by ▴ 620 • written 21.5 years ago by ▴ 940
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1.6k
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Answer: A: Error with library(limma) with R2.0 devel
21.5 years ago Matthew Hannah ▴ 940
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4
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1.6k
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Error with library(limma) with R2.0 devel
limma limma
21.5 years ago Matthew Hannah ▴ 940
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0
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2.3k
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Answer: A: RE: RMA normalization
21.5 years ago Matthew Hannah ▴ 940
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0
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2.0k
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Answer: A: MAS5 and GCOC difference to get CEL files
21.5 years ago Matthew Hannah ▴ 940
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0
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1.4k
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Answer: A: Errors w/ getBioC(develOK =TRUE) with R2.0 devel
21.5 years ago Matthew Hannah ▴ 940
0
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1
reply
1.4k
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.5 years ago Matthew Hannah ▴ 940
0
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0
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759
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Affymetrix is changing its labelling kit - data analysis will change!?
affy affy
21.5 years ago Matthew Hannah ▴ 940
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0
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1.1k
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Do I now understand Limma contrast matrices??
21.5 years ago Matthew Hannah ▴ 940
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0
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1.1k
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GCRMA/RMA bimodal distribution
drosgenome1 limma gcrma drosgenome1 limma gcrma
21.5 years ago Matthew Hannah ▴ 940
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5
replies
1.7k
views
GCRMA/RMA bimodal distribution
gcrma gcrma
updated 21.5 years ago by ★ 6.0k • written 21.5 years ago by ▴ 940
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0
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1.7k
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Answer: A: GCRMA/RMA bimodal distribution
21.5 years ago Matthew Hannah ▴ 940
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0
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1.5k
views
Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.5 years ago Matthew Hannah ▴ 940
0
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0
replies
1.2k
views
Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma GO Regression limma
21.5 years ago Matthew Hannah ▴ 940
0
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1
reply
1.2k
views
FW: Limma p-values, fdr and classifyTests
limma limma
updated 21.5 years ago by 53k • written 21.5 years ago by ▴ 940
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0
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1.2k
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Answer: A: Unexpected results using limma with numerical factor
21.5 years ago Matthew Hannah ▴ 940
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0
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1.2k
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RE: Design matrix with multiple genotypes + quantified variables (+cor/regression)
Regression limma Regression limma
21.5 years ago Matthew Hannah ▴ 940
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0
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746
views
AffyPLM can detect poor labelling on test chips
affy affy
21.5 years ago Matthew Hannah ▴ 940
0
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0
replies
844
views
Design matrix with multiple genotypes + quantified variables
Regression Regression
21.5 years ago Matthew Hannah ▴ 940
94 results • Page 1 of 2
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