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1.3k
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Limma p-values, fdr and classifyTests
limma
updated 5.2 years ago by 50k • written 19.8 years ago by ▴ 940
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0
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1.1k
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ath1121501probe_1.0 error (was GCRMA missing value error on ATH1 chip)
probe affy probe affy
updated 5.3 years ago by 0 • written 20.3 years ago by ▴ 940
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0
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1.2k
views
double violation of normalization assumptions?
Microarray Normalization probe limma gcrma Microarray Normalization probe limma gcrma
18.3 years ago Matthew Hannah ▴ 940
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1
reply
1.1k
views
RNA degradation problem
Normalization affy limma affyPLM PROcess Normalization affy limma affyPLM PROcess
updated 18.3 years ago by ▴ 810 • written 18.3 years ago by ▴ 940
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0
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864
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PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
18.6 years ago Matthew Hannah ▴ 940
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0
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1.1k
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permutation/resampling FDR correction
Regression limma Regression limma
18.9 years ago Matthew Hannah ▴ 940
0
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1
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768
views
Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
updated 19.1 years ago by ▴ 210 • written 19.1 years ago by ▴ 940
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0
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1.0k
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limma regression / fdr permutation correction
19.2 years ago Matthew Hannah ▴ 940
0
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1
reply
953
views
GCRMA: low intensity exprs estimates / pval distributions
gcrma gcrma
19.2 years ago Matthew Hannah ▴ 940
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0
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894
views
RMA verse GCRMA, low intensity
cycle cycle
19.2 years ago Matthew Hannah ▴ 940
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1
reply
1.3k
views
kyte and doolittle hydropathy values/plot - sub + sliding window mean
graph convert graph convert
19.5 years ago Matthew Hannah ▴ 940
0
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0
replies
890
views
limma p.values, tech replication and dup cor
affy limma oligo affy limma oligo
19.5 years ago Matthew Hannah ▴ 940
0
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0
replies
645
views
gcrma - all low value output - error somewhere?
cdf affy gcrma matchprobes cdf affy gcrma matchprobes
19.5 years ago Matthew Hannah ▴ 940
0
votes
1
reply
831
views
gcrma.bg.transformation missing
gcrma gcrma
updated 19.5 years ago by ▴ 410 • written 19.5 years ago by ▴ 940
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1
reply
415
views
agcdf / atgenome1probe
updated 19.6 years ago by ▴ 950 • written 19.6 years ago by ▴ 940
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0
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666
views
Limma with multiple samples but only 2 reps
limma limma
19.6 years ago Matthew Hannah ▴ 940
0
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0
replies
616
views
ULYSIS Alexa Fluor labelling kit / dye bias / limma
limma limma
19.6 years ago Matthew Hannah ▴ 940
0
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0
replies
731
views
Limma p-value distributions, false +ve/-ve etc...
limma limma
19.6 years ago Matthew Hannah ▴ 940
0
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3
replies
3.7k
views
Selecting p-value cutoffs for differential expression
limma gcrma limma gcrma
updated 19.6 years ago by ▴ 20 • written 19.7 years ago by ▴ 940
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0
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1.4k
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RE: Normalising divergent samples.
Microarray Normalization affy limma gcrma Microarray Normalization affy limma gcrma
19.6 years ago Matthew Hannah ▴ 940
0
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1
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1.3k
views
Normalising divergent samples.
Microarray Normalization affy limma gcrma Microarray Normalization affy limma gcrma
updated 19.7 years ago by ▴ 620 • written 19.7 years ago by ▴ 940
0
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4
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1.1k
views
Error with library(limma) with R2.0 devel
limma limma
19.7 years ago Matthew Hannah ▴ 940
0
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1
reply
1.1k
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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0
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608
views
Affymetrix is changing its labelling kit - data analysis will change!?
affy affy
19.7 years ago Matthew Hannah ▴ 940
0
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0
replies
876
views
Do I now understand Limma contrast matrices??
19.7 years ago Matthew Hannah ▴ 940
0
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0
replies
882
views
GCRMA/RMA bimodal distribution
drosgenome1 limma gcrma drosgenome1 limma gcrma
19.7 years ago Matthew Hannah ▴ 940
0
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5
replies
1.2k
views
GCRMA/RMA bimodal distribution
gcrma gcrma
updated 19.7 years ago by ★ 6.0k • written 19.7 years ago by ▴ 940
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0
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1.0k
views
Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
0
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0
replies
1.0k
views
Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma GO Regression limma
19.7 years ago Matthew Hannah ▴ 940
0
votes
1
reply
939
views
FW: Limma p-values, fdr and classifyTests
limma limma
updated 19.7 years ago by 50k • written 19.7 years ago by ▴ 940
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0
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933
views
RE: Design matrix with multiple genotypes + quantified variables (+cor/regression)
Regression limma Regression limma
19.7 years ago Matthew Hannah ▴ 940
0
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0
replies
569
views
AffyPLM can detect poor labelling on test chips
affy affy
19.7 years ago Matthew Hannah ▴ 940
0
votes
0
replies
677
views
Design matrix with multiple genotypes + quantified variables
Regression Regression
19.8 years ago Matthew Hannah ▴ 940
0
votes
2
replies
725
views
2-colour bias AFTER normalising with Limma, labelling QC
limma limma
19.8 years ago Matthew Hannah ▴ 940
0
votes
0
replies
666
views
2-colour cDNA data quality (+different species)
limma limma
19.8 years ago Matthew Hannah ▴ 940
0
votes
1
reply
691
views
Normalising divergent samples - Discussion (Please!)
oligo oligo
19.8 years ago Matthew Hannah ▴ 940
0
votes
1
reply
834
views
boxplot(affybatch)
affy affy
updated 19.8 years ago by 65k • written 19.8 years ago by ▴ 940
0
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2
replies
991
views
Affymetrix Limma design/contrast matrix
limma limma
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 940
0
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4
replies
1.1k
views
win 64bit and general BioC computing power?
GO Clustering affy limma gcrma PROcess GO Clustering affy limma gcrma PROcess
updated 19.9 years ago by ▴ 360 • written 19.9 years ago by ▴ 940
0
votes
2
replies
895
views
Un-balanced dye-swaps and LIMMA
limma limma
20.0 years ago Matthew Hannah ▴ 940
0
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0
replies
701
views
(GC)RMA when there are BIG treatment effects.
multtest affy gcrma multtest affy gcrma
20.0 years ago Matthew Hannah ▴ 940
0
votes
2
replies
694
views
Problem with latest win32 package installs
GO probe Biobase affy GO probe Biobase affy
20.2 years ago Matthew Hannah ▴ 940
0
votes
5
replies
1.4k
views
Problem with limma - psigamma?
limma limma
20.2 years ago Matthew Hannah ▴ 940
0
votes
1
reply
759
views
Genelogic dilution series mixed samples
updated 20.2 years ago by ★ 2.3k • written 20.2 years ago by ▴ 940
0
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0
replies
657
views
RMA false positive rate
20.2 years ago Matthew Hannah ▴ 940
0
votes
7
replies
1.7k
views
Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
20.3 years ago Matthew Hannah ▴ 940
0
votes
3
replies
789
views
ath1121501probe_1.0 error (was GCRMA missing value error)
cdf probe gcrma matchprobes cdf probe gcrma matchprobes
20.3 years ago Matthew Hannah ▴ 940
0
votes
0
replies
978
views
ath1121501probe_1.0 error (was GCRMA missing value error on ATH1 chip)
GO probe affy gcrma Biostrings GO probe affy gcrma Biostrings
20.3 years ago Matthew Hannah ▴ 940
0
votes
1
reply
712
views
GCRMA missing value error on ATH1 chip
gcrma gcrma
updated 20.3 years ago by ▴ 410 • written 20.3 years ago by ▴ 940
0
votes
0
replies
843
views
makeProbePackage problems?
probe gcrma probe gcrma
20.3 years ago Matthew Hannah ▴ 940
51 results • Page 1 of 2
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