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Answer: Answer: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4 months ago Matthias Lienhard ▴ 240
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Answer: Answer: QSEA: normalisation >> sequencing preference
14 months ago Matthias Lienhard ▴ 240
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Answer: Answer: Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
14 months ago Matthias Lienhard ▴ 240
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Predict branchpoints closer to the 3' splice site
branchpointer
2.2 years ago Matthias Lienhard ▴ 240
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Comment: Comment: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.0 years ago Matthias Lienhard ▴ 240
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Comment: Comment: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.0 years ago Matthias Lienhard ▴ 240
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Comment: Comment: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.0 years ago Matthias Lienhard ▴ 240
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Comment: Comment: No beta scores generated in samples eluted at low salt concentration (MBD-seq) w
3.0 years ago Matthias Lienhard ▴ 240
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Answer: Answer: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.0 years ago Matthias Lienhard ▴ 240
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1
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1.7k
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Answer: Answer: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.0 years ago Matthias Lienhard ▴ 240
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Answer: Answer: addPatternDensity in 'qsea' takes too much time
3.3 years ago Matthias Lienhard ▴ 240
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
3.7 years ago Matthias Lienhard ▴ 240
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
3.8 years ago Matthias Lienhard ▴ 240
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3.0k
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Answer: A: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
3.8 years ago Matthias Lienhard ▴ 240
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3.0k
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
3.8 years ago Matthias Lienhard ▴ 240
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.1 years ago Matthias Lienhard ▴ 240
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.1 years ago Matthias Lienhard ▴ 240
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Answer: A: Qsea - plotCoverage
4.1 years ago Matthias Lienhard ▴ 240
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Answer: A: Qsea - plotCoverage
4.1 years ago Matthias Lienhard ▴ 240
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.1 years ago Matthias Lienhard ▴ 240
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3.0k
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.2 years ago Matthias Lienhard ▴ 240
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965
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Answer: A: Read counts between QSEA and MEDIPs
4.2 years ago Matthias Lienhard ▴ 240
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Answer: A: Qsea - addEnrichmentParameters() - Using INPUT Samples
4.2 years ago Matthias Lienhard ▴ 240
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Answer: A: MBDseq analysis using qsea package
4.7 years ago Matthias Lienhard ▴ 240
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1.6k
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Comment: C: qsea non-TCGA 450K Human Methylation Calibration Dataset
5.0 years ago Matthias Lienhard ▴ 240
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1.6k
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Comment: C: qsea non-TCGA 450K Human Methylation Calibration Dataset
5.8 years ago Matthias Lienhard ▴ 240
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870
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Answer: A: Error running the addCoverage command in QSEA with a custom BSGenome reference
5.9 years ago Matthias Lienhard ▴ 240
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1.6k
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Answer: A: qsea non-TCGA 450K Human Methylation Calibration Dataset
6.0 years ago Matthias Lienhard ▴ 240
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Comment: C: QSEA: Need help on creating ROI for whole genome MeDIPSeq data
6.2 years ago Matthias Lienhard ▴ 240
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Comment: C: QSEA Error while loading the bam files
6.2 years ago Matthias Lienhard ▴ 240
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1.2k
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Answer: A: QSEA: Need help on creating ROI for whole genome MeDIPSeq data
6.2 years ago Matthias Lienhard ▴ 240
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1.0k
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Answer: A: QSEA: Error while addLibraryFactors
6.2 years ago Matthias Lienhard ▴ 240
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1.3k
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Answer: A: QSEA Error while loading the bam files
6.2 years ago Matthias Lienhard ▴ 240
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Comment: C: CNV parameter not working - MEDIPS
7.0 years ago Matthias Lienhard ▴ 240
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1.6k
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Comment: C: CNV parameter not working - MEDIPS
7.0 years ago Matthias Lienhard ▴ 240
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1.6k
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Answer: A: CNV parameter not working - MEDIPS
7.0 years ago Matthias Lienhard ▴ 240
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Answer: A: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
7.1 years ago Matthias Lienhard ▴ 240
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1
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1.4k
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Comment: C: Alternative methylation contexts with MEDIPS?
7.8 years ago Matthias Lienhard ▴ 240
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1.4k
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Answer: A: Alternative methylation contexts with MEDIPS?
7.8 years ago Matthias Lienhard ▴ 240
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Comment: C: New to R: How to use your own data for Bioconductor Packages
8.7 years ago Matthias Lienhard ▴ 240
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885
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SssI free analysis in BayMeth/Repitools
repitools
8.8 years ago Matthias Lienhard ▴ 240
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Answer: A: Non-CpG Methylation in MEDIPS Package
9.2 years ago Matthias Lienhard ▴ 240
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Answer: A: mr.edgeR tests in MEDIPS package
10.0 years ago Matthias Lienhard ▴ 240
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Answer: A: [MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, n
10.3 years ago Matthias Lienhard ▴ 240
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1.7k
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Comment: C: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome
10.4 years ago Matthias Lienhard ▴ 240
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1.7k
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Comment: C: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome
10.4 years ago Matthias Lienhard ▴ 240
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Answer: A: Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: B
10.4 years ago Matthias Lienhard ▴ 240
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