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repitools
•
reset
0
votes
3
replies
2.0k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.4 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.4k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.3 years ago
divyswar01
• 0
0
votes
0
replies
935
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
8.1 years ago
pm2015
• 0
0
votes
0
replies
926
views
SssI free analysis in BayMeth/Repitools
repitools
9.0 years ago
Matthias Lienhard
▴ 240
0
votes
0
replies
1.0k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.4 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.4k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.4 years ago
Jaritz,Markus
▴ 20
0
votes
5
replies
2.2k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 10.7 years ago by
Dario Strbenac
★ 1.5k • written 10.7 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
1.0k
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.4 years ago
Guest User
★ 13k
0
votes
21
replies
6.9k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 8 months ago by
Marge
• 0 • written 11.6 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
1.8k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 12.7 years ago by
Chao-Jen Wong
▴ 580 • written 12.7 years ago by
Guest User
★ 13k
10 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
▴ 730
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to
maltethodberg
▴ 180
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to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
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to
Gordon Smyth
51k
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