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Comment: C: Microarray expression analysis for on factor taking account confounders (covaria
7.7 years ago Aaron Lun ★ 29k
0
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3.2k
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Comment: C: Microarray expression analysis for on factor taking account confounders (covaria
7.7 years ago Aaron Lun ★ 29k
0
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1
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3.2k
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Comment: C: Microarray expression analysis for on factor taking account confounders (covaria
7.7 years ago Aaron Lun ★ 29k
0
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1
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3.2k
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Answer: A: Microarray expression analysis for on factor taking account confounders (covaria
7.7 years ago Aaron Lun ★ 29k
1
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0
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994
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Answer: A: Normalize for changes in one direction
7.8 years ago Aaron Lun ★ 29k
1
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1
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2.3k
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Answer: A: SingleCellExperiment object cannot be used by Scater package?
7.8 years ago Aaron Lun ★ 29k
6
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0
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3.7k
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Answer: A: Downstream analysis after using mnnCorrect()
7.8 years ago Aaron Lun ★ 29k
3
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1
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1.0k
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pkgDepTools does not consider LinkingTo: fields
pkgDepTools LinkingTo
updated 7.8 years ago by 25k • written 7.8 years ago by ★ 29k
1
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1
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2.7k
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Comment: C: edgeR - comparing treatment groups across multiple populations
7.8 years ago Aaron Lun ★ 29k
2
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1
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2.7k
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Answer: A: edgeR - comparing treatment groups across multiple populations
7.8 years ago Aaron Lun ★ 29k
2
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1
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1.2k
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Answer: A: edgeR - problems with coefficients and decideTests
7.8 years ago Aaron Lun ★ 29k
2
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0
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1.4k
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Answer: A: read.delim taking infinite time in edgeR analysis
7.8 years ago Aaron Lun ★ 29k
0
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1
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2.3k
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Comment: C: Best way to design a contrast matrix for analysis of dataset
7.8 years ago Aaron Lun ★ 29k
0
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2
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4.3k
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Comment: C: Beachmat install / compile issue
7.8 years ago Aaron Lun ★ 29k
0
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0
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1.9k
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Comment: C: two factor chip with diffbind and edgeR (or DESeq2).
7.8 years ago Aaron Lun ★ 29k
0
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0
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2.1k
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Comment: C: RNA-seq Batch Correction
7.8 years ago Aaron Lun ★ 29k
0
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1
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4.3k
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Comment: C: Beachmat install / compile issue
7.8 years ago Aaron Lun ★ 29k
0
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1
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3.7k
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Comment: C: Removing batch effects from microarray data based on only a subset of samples
7.8 years ago Aaron Lun ★ 29k
1
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1
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2.1k
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Answer: A: RNA-seq Batch Correction
7.8 years ago Aaron Lun ★ 29k
1
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1
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2.7k
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Comment: C: Allele Specific Expression Using edgeR
7.8 years ago Aaron Lun ★ 29k
0
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1
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1.9k
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Comment: C: two factor chip with diffbind and edgeR (or DESeq2).
7.8 years ago Aaron Lun ★ 29k
0
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1
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1.9k
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Answer: A: two factor chip with diffbind and edgeR (or DESeq2).
7.8 years ago Aaron Lun ★ 29k
1
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1
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9.3k
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Comment: C: edgeR design matrix and contrasts: how to make contrast between groups that aren
7.8 years ago Aaron Lun ★ 29k
0
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0
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4.3k
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Comment: C: Beachmat install / compile issue
7.8 years ago Aaron Lun ★ 29k
0
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1
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2.3k
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Comment: C: Best way to design a contrast matrix for analysis of dataset
7.8 years ago Aaron Lun ★ 29k
0
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0
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4.3k
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Answer: A: Beachmat install / compile issue
7.8 years ago Aaron Lun ★ 29k
3
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0
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2.3k
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Answer: A: Best way to design a contrast matrix for analysis of dataset
7.8 years ago Aaron Lun ★ 29k
0
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0
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880
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Answer: A: calculateQCmetrics doesn't accept `numeric` `feature_controls` in scater 1.6.2
7.8 years ago Aaron Lun ★ 29k
10
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3
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4.7k
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Answer: A: Is Limma's removeBatchEffect() and log2() commutative?
9.6 years ago • updated 7.8 years ago Aaron Lun ★ 29k
0
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0
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4.7k
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Comment: C: Is Limma's removeBatchEffect() and log2() commutative?
7.8 years ago Aaron Lun ★ 29k
0
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0
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2.1k
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Answer: A: scalability of edgeR on RRBS methylation data
7.8 years ago Aaron Lun ★ 29k
0
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1
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1.8k
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Answer: A: edgeR:fitted and partial expression values
7.8 years ago Aaron Lun ★ 29k
2
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1
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1.3k
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Answer: A: edgeR: error ih summary(decideTests(lrt))
updated 7.8 years ago by 53k • written 7.8 years ago by ★ 29k
0
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0
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1.3k
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Comment: C: edgeR: error ih summary(decideTests(lrt))
7.8 years ago Aaron Lun ★ 29k
0
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0
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2.5k
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Comment: C: error when installing beachmat
7.8 years ago Aaron Lun ★ 29k
0
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0
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1.5k
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Answer: A: Differential analysis between single sample vs single sample (control vs treatme
7.8 years ago Aaron Lun ★ 29k
0
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0
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2.4k
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Comment: C: scater/scran with TPMs from Salmon - counts?
7.8 years ago Aaron Lun ★ 29k
1
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1
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2.4k
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Answer: A: scater/scran with TPMs from Salmon - counts?
7.8 years ago Aaron Lun ★ 29k
2
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1
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2.3k
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Answer: A: RNAseq analysis: how to compare two very different samples?
7.8 years ago Aaron Lun ★ 29k
2
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0
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1.1k
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Comment: C: logo issue: not right handed DNA
7.8 years ago Aaron Lun ★ 29k
0
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0
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1.7k
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Comment: C: edgeR trended or tagwise
7.8 years ago Aaron Lun ★ 29k
0
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0
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2.2k
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Answer: A: Incorporating 'offset' into edgeR pipeline
7.8 years ago Aaron Lun ★ 29k
3
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2
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1.7k
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Answer: A: edgeR trended or tagwise
7.9 years ago Aaron Lun ★ 29k
1
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1
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4.5k
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Comment: C: Analyse only protein_coding genes
7.9 years ago Aaron Lun ★ 29k
1
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0
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1.7k
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Answer: A: voom command broken in limma_3.34.5?
7.9 years ago Aaron Lun ★ 29k
0
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1
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4.5k
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Answer: A: Analyse only protein_coding genes
7.9 years ago Aaron Lun ★ 29k
1
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0
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2.4k
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Answer: A: Filtering a BED file according to genomic annotation
7.9 years ago Aaron Lun ★ 29k
2
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1
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1.4k
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Answer: A: scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
7.9 years ago Aaron Lun ★ 29k
0
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0
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782
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Comment: C: scater automatically limit gene list size?
7.9 years ago Aaron Lun ★ 29k
0
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0
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2.0k
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Comment: C: Can DESeq2/edgeR perform differential analysis for rRNA?
7.9 years ago Aaron Lun ★ 29k
2,880 results • Page 19 of 58
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