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Comment: C: csaw autosim.R: Error in crunch2BAM(fnames): failed to sort BAM file
9.1 years ago Aaron Lun ★ 29k
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Comment: C: csaw autosim.R: Error in crunch2BAM(fnames): failed to sort BAM file
9.1 years ago Aaron Lun ★ 29k
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Comment: C: adjusted p-values and p-values problems!
9.1 years ago Aaron Lun ★ 29k
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Answer: A: Limma-Voom which of two models is correct?
9.1 years ago Aaron Lun ★ 29k
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Comment: C: Limma-Voom which of two models is correct?
9.1 years ago Aaron Lun ★ 29k
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1.8k
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Comment: C: Limma-Voom which of two models is correct?
9.1 years ago Aaron Lun ★ 29k
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1
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3.6k
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Comment: C: limma-voom or edgeR for paired designs both within and between comparisons
9.1 years ago Aaron Lun ★ 29k
2
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6.1k
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Answer: A: edgeR and removeBatchEffect()
9.1 years ago Aaron Lun ★ 29k
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1.8k
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Comment: C: diffHic: Error while counting in predefined regions
9.2 years ago Aaron Lun ★ 29k
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1.0k
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Answer: A: interaction formulas without replicates
9.2 years ago Aaron Lun ★ 29k
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Comment: C: interaction formulas without replicates
9.2 years ago Aaron Lun ★ 29k
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1.8k
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Comment: C: diffHic: Error while counting in predefined regions
9.2 years ago Aaron Lun ★ 29k
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1
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1.8k
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Comment: C: diffHic: Error while counting in predefined regions
9.2 years ago Aaron Lun ★ 29k
2
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1
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1.5k
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Answer: A: Where is the source code for qAbundanceDist?
9.2 years ago Aaron Lun ★ 29k
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1
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1.5k
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Comment: C: how to export data as excel file from plotSmear when using edgeR
9.2 years ago Aaron Lun ★ 29k
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1
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3.6k
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Comment: C: limma-voom or edgeR for paired designs both within and between comparisons
9.2 years ago Aaron Lun ★ 29k
3
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1.4k
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Answer: A: Limma blocking on unbalanced factor
9.2 years ago Aaron Lun ★ 29k
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1.2k
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Comment: C: Error in plotDI in pacakge diffHic
9.2 years ago Aaron Lun ★ 29k
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3.6k
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Answer: A: limma-voom or edgeR for paired designs both within and between comparisons
9.2 years ago Aaron Lun ★ 29k
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1.5k
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Answer: A: How to run plotPlaid in diffHic Package using output from hic Pro
9.2 years ago Aaron Lun ★ 29k
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1.2k
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Answer: A: Error in plotDI in pacakge diffHic
9.2 years ago Aaron Lun ★ 29k
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2.2k
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Comment: C: How to account for population variation within regions in EdgeR?
9.2 years ago Aaron Lun ★ 29k
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1
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1.8k
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Comment: C: diffHic: Error while counting in predefined regions
9.2 years ago Aaron Lun ★ 29k
0
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1.8k
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Comment: C: diffHic: Error while counting in predefined regions
9.2 years ago Aaron Lun ★ 29k
1
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1.8k
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Answer: A: diffHic: Error while counting in predefined regions
9.2 years ago Aaron Lun ★ 29k
0
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0
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1.8k
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Comment: C: diffHic: Error while counting in predefined regions
9.2 years ago Aaron Lun ★ 29k
1
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1.5k
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Comment: C: diffHic:Fails to load bam file during preparePairs
9.2 years ago Aaron Lun ★ 29k
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2.9k
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Comment: C: Limma Voom and quadratic regression
9.2 years ago Aaron Lun ★ 29k
2
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3.3k
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Answer: A: [EdgeR] question about the y$samples$lib.size and y$samples$norm.factors
9.2 years ago Aaron Lun ★ 29k
1
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1.8k
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Answer: A: RNA-seq time series data analysis
9.2 years ago Aaron Lun ★ 29k
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1.1k
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Comment: C: subread aligner for DNA WGS_how to increase the speed of subread?
9.2 years ago Aaron Lun ★ 29k
2
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1.7k
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Answer: A: Problems with running limma voom on subsets of genes from WGCNA modules?
9.2 years ago Aaron Lun ★ 29k
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0
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1.9k
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Comment: C: Correlation analysis taking into account multiple correlations
9.2 years ago Aaron Lun ★ 29k
3
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1
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1.9k
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Answer: A: Correlation analysis taking into account multiple correlations
9.2 years ago Aaron Lun ★ 29k
3
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2.0k
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Answer: A: Targeted RNASeq/CaptureSeq DE Analysis
9.2 years ago Aaron Lun ★ 29k
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1
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1.7k
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Comment: C: Problems with running limma voom on subsets of genes from WGCNA modules?
9.2 years ago Aaron Lun ★ 29k
0
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0
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4.8k
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Comment: C: How to properly normalize a single-cell sparse matrix?
9.2 years ago Aaron Lun ★ 29k
2
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1
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4.8k
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Answer: A: How to properly normalize a single-cell sparse matrix?
9.2 years ago Aaron Lun ★ 29k
2
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1
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3.3k
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Comment: C: Duplicate Correlation with technical replicates
9.2 years ago Aaron Lun ★ 29k
1
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0
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3.8k
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Comment: C: Error when calculating DE using the classical approach in edgeR
9.2 years ago Aaron Lun ★ 29k
0
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0
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1.3k
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Answer: A: generate ContactMatrix from InteractionSet object
9.2 years ago Aaron Lun ★ 29k
4
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1
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3.8k
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Answer: A: Error when calculating DE using the classical approach in edgeR
9.2 years ago Aaron Lun ★ 29k
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1
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3.2k
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Comment: C: EdgeR glmLRT vs glmQL - hundreds of DE genes with glmLRT, almost none with glmQL
9.2 years ago Aaron Lun ★ 29k
3
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1
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1.6k
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Answer: A: ROAST after edgeR glmTreat and average RPKM filter
9.2 years ago Aaron Lun ★ 29k
3
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0
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3.2k
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Answer: A: EdgeR glmLRT vs glmQL - hundreds of DE genes with glmLRT, almost none with glmQL
9.2 years ago Aaron Lun ★ 29k
0
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1
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3.2k
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Comment: C: EdgeR glmLRT vs glmQL - hundreds of DE genes with glmLRT, almost none with glmQL
9.2 years ago Aaron Lun ★ 29k
0
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0
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1.5k
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Answer: A: diffHic:Fails to load bam file during preparePairs
9.2 years ago Aaron Lun ★ 29k
4
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0
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4.3k
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Tutorial: Workflow for low-level analysis of single-cell RNA-seq data
scran scater single cell Tutorial
9.2 years ago Aaron Lun ★ 29k
5
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1
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5.0k
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Answer: A: Disagreement between TMM (edgeR) and RLE (DESeq) normalisation for single-cell d
9.2 years ago Aaron Lun ★ 29k
2
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0
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5.0k
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Comment: C: Disagreement between TMM (edgeR) and RLE (DESeq) normalisation for single-cell d
9.2 years ago Aaron Lun ★ 29k
2,880 results • Page 34 of 58
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