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Comment: C: MDS plot; Batch effects
6.6 years ago Aaron Lun ★ 29k
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3.3k
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Comment: C: MDS plot; Batch effects
6.6 years ago Aaron Lun ★ 29k
2
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1
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3.3k
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Answer: A: MDS plot; Batch effects
6.6 years ago Aaron Lun ★ 29k
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2.1k
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Comment: C: Cydar normalizeBatch specifying batches
6.6 years ago Aaron Lun ★ 29k
2
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8.2k
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Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
6.6 years ago Aaron Lun ★ 29k
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4.6k
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Comment: C: limma random effects and multi level experiments
6.6 years ago Aaron Lun ★ 29k
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1.5k
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Answer: A: diffHic ICE normalization PCA with NAs
6.6 years ago Aaron Lun ★ 29k
3
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1
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1.8k
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Answer: A: EdgeR between/within comparisons (3.5) with nested non-balanced data set
6.6 years ago Aaron Lun ★ 29k
1
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1
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2.2k
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Answer: A: What's the best way to use "semi" technical replicates with biological replicate
6.6 years ago Aaron Lun ★ 29k
0
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1
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2.1k
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Comment: C: Cydar normalizeBatch specifying batches
6.6 years ago Aaron Lun ★ 29k
0
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1
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1.8k
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Comment: C: EdgeR between/within comparisons (3.5) with nested non-balanced data set
6.6 years ago Aaron Lun ★ 29k
0
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1
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2.1k
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Comment: C: Cydar normalizeBatch specifying batches
6.6 years ago Aaron Lun ★ 29k
5
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1
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3.9k
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Answer: A: Usage of doubletCells() function before or after the batch correction?
6.6 years ago Aaron Lun ★ 29k
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1
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1.5k
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Answer: A: In which order should you detect empty droplets / remove barcode swapping using
6.6 years ago Aaron Lun ★ 29k
0
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0
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3.4k
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Comment: C: Help with Limma F.p.value from eBayes
6.6 years ago Aaron Lun ★ 29k
1
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1
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2.1k
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Answer: A: Cydar normalizeBatch specifying batches
6.6 years ago Aaron Lun ★ 29k
1
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0
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2.4k
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Comment: C: Unable to change point size in plotExpression()
6.6 years ago Aaron Lun ★ 29k
0
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1
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3.4k
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Comment: C: Help with Limma F.p.value from eBayes
6.6 years ago Aaron Lun ★ 29k
0
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0
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1.6k
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Comment: C: limma with paired samples and a continuous variable
6.6 years ago Aaron Lun ★ 29k
2
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2
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3.4k
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Answer: A: Help with Limma F.p.value from eBayes
6.6 years ago Aaron Lun ★ 29k
0
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1
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2.2k
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Comment: C: What's the best way to use "semi" technical replicates with biological replicate
6.6 years ago Aaron Lun ★ 29k
1
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1
reply
1.6k
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Answer: A: limma with paired samples and a continuous variable
6.6 years ago Aaron Lun ★ 29k
1
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1
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2.4k
views
Answer: A: Unable to change point size in plotExpression()
6.6 years ago Aaron Lun ★ 29k
1
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0
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2.6k
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Comment: C: Using SC3 with batch corrected MNN values
6.6 years ago Aaron Lun ★ 29k
0
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4.8k
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Comment: C: ERROR - Size factors should be positive real numbers (using normalize() function
6.6 years ago Aaron Lun ★ 29k
1
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2
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2.5k
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Answer: A: Combining and using 10x Genomics output in SingleCellExperiment Objects
6.6 years ago Aaron Lun ★ 29k
2
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2
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4.8k
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Answer: A: ERROR - Size factors should be positive real numbers (using normalize() function
6.6 years ago Aaron Lun ★ 29k
6
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0
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1.7k
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News: Winners of the 1st Shiny Contest: iSEE
iSEE shiny summarizedExperiment News
6.6 years ago Aaron Lun ★ 29k
1
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0
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1.8k
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Answer: A: Segmentation Fault with development versions of R, Bioconductor, and DropletUtil
6.6 years ago Aaron Lun ★ 29k
0
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1
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1.7k
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Comment: C: HTA 2.0 Differential expression analysis - design question
6.6 years ago Aaron Lun ★ 29k
4
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1
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4.6k
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Answer: A: Log2(RPKM) counts in Bioconductor
6.6 years ago Aaron Lun ★ 29k
2
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2.0k
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Answer: A: Bioconductor with RPKM counts or Raw counts
6.6 years ago Aaron Lun ★ 29k
0
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0
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2.6k
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Answer: A: Error importing molecule_info.h5 file generated by Cell Ranger 3.0.2 into Drople
6.6 years ago Aaron Lun ★ 29k
0
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2.6k
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Comment: C: Error importing molecule_info.h5 file generated by Cell Ranger 3.0.2 into Drople
6.6 years ago Aaron Lun ★ 29k
4
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1
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2.1k
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Answer: A: Association analysis between gene expression and Phenotype
6.6 years ago Aaron Lun ★ 29k
1
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0
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724
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Answer: A: HOW TO USE LIMMA PACKAGE
6.6 years ago Aaron Lun ★ 29k
0
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0
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1.1k
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Answer: A: differential expression analysis of rice
6.6 years ago Aaron Lun ★ 29k
0
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1
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2.1k
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Comment: C: Association analysis between gene expression and Phenotype
6.6 years ago Aaron Lun ★ 29k
0
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0
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1.6k
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Answer: A: Can DropletUtils Package be used to identify cells for 10X VDJ data ?
6.6 years ago Aaron Lun ★ 29k
0
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1
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515
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Answer: A: DelayedArray package error
6.6 years ago Aaron Lun ★ 29k
1
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0
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1.8k
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Comment: C: Appropriate experimental design for differential expresion
6.6 years ago Aaron Lun ★ 29k
1
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2
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1.8k
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Comment: C: Appropriate experimental design for differential expresion
6.6 years ago Aaron Lun ★ 29k
0
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0
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1.6k
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Comment: C: RNA-seq Statstical Models and Transcriptional Amplification
6.6 years ago Aaron Lun ★ 29k
0
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0
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2.0k
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Comment: C: Experimental design RNAseq differential expression
6.6 years ago Aaron Lun ★ 29k
2
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1
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1.6k
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Answer: A: RNA-seq Statstical Models and Transcriptional Amplification
6.7 years ago Aaron Lun ★ 29k
0
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0
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1.3k
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Answer: A: Submitting R package in Bioconductor with Plink and vcftools Dependencies
6.7 years ago Aaron Lun ★ 29k
0
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1
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2.0k
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Comment: C: Experimental design RNAseq differential expression
6.7 years ago Aaron Lun ★ 29k
3
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1
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2.0k
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Answer: A: Experimental design RNAseq differential expression
6.7 years ago Aaron Lun ★ 29k
0
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0
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1.4k
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Comment: C: Modeling with 'discontinuous' continuous variables, or continuous variables with
6.7 years ago Aaron Lun ★ 29k
2
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1
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1.5k
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Answer: A: normalization for infected homogenious cell populations
6.7 years ago Aaron Lun ★ 29k
2,880 results • Page 8 of 58
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