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updated 2 days ago by
Leonard Goldstein
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written 6.7 years ago by
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updated 19 hours ago by
Daniele
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written 5.5 years ago by
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written 11 weeks ago by
Kim
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updated 29 days ago by
i.atanasoai
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written 15 months ago by
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6 months ago • updated 26 days ago
shepherl
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updated 16 days ago by
James W. MacDonald
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written 2.3 years ago by
yanchangjian2019
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updated 8 days ago by
Gordon Smyth
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written 4 weeks ago by
Shaimaa Gamal
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updated 25 days ago by
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written 7.8 years ago by
dmcleanuk
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16 days ago
shepherl
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updated 2 days ago by
ATpoint
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written 3 days ago by
pangtaihin
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updated 3 days ago by
Yun
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written 5.2 years ago by
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5 weeks ago • updated 11 days ago
Juan Higareda
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15 days ago • updated 12 days ago
gene_bioconductor
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updated 27 days ago by
Gordon Smyth
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James W. MacDonald
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17 days ago • updated 4 days ago
mat149
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robersy
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Michael Love
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i.sudbery
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written 5.6 years ago by
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updated 26 days ago by
Guido Hooiveld
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written 28 days ago by
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Michael Love
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updated 11 days ago by
James W. MacDonald
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updated 26 days ago by
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10 days ago • updated 7 days ago
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Alejandro Reyes
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updated 23 days ago by
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3 days ago • updated 1 day ago
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updated 29 days ago by
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updated 22 days ago by
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27 days ago • updated 23 days ago
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updated 12 days ago by
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updated 24 days ago by
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Recent ...
Replies
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
•
0
Hi,
I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation.
Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★
1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
•
0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed.
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